Variant report

Variant	rs4710029
Chromosome Location	chr6:166657699-166657700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr6:166657541-166658095	GM12878	blood:	n/a	n/a
2	MAX	chr6:166657684-166658140	GM12878	blood:	n/a	n/a
3	RFX5	chr6:166657692-166658332	GM12878	blood:	n/a	n/a
4	RUNX3	chr6:166657667-166658479	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166657165..166659175-chr6:166659836..166662538,2	K562	blood:

Variant related genes	Relation type
GNG5P1	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10223678	0.87[ASN][1000 genomes]
rs10946138	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10946140	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10946141	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1884958	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1884959	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1884960	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1884961	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2064880	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35173009	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4709107	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456063	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6456064	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6456065	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6900299	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6901921	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6909730	0.84[ASN][1000 genomes]
rs6916613	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6940605	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7740044	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7741146	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7741297	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7741819	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7765783	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7766299	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9348100	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9356448	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9365973	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9365980	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166654400-166659000	Enhancers	Fetal Thymus	thymus
2	chr6:166655200-166666400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:166656800-166657800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr6:166656800-166658000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:166657200-166657800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr6:166657200-166658600	Flanking Active TSS	Dnd41	blood
7	chr6:166657200-166658800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:166657400-166657800	Enhancers	Primary B cells from cord blood	blood
9	chr6:166657400-166657800	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:166657400-166657800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:166657400-166657800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr6:166657400-166658000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr6:166657400-166658000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:166657400-166658800	Flanking Active TSS	GM12878-XiMat	blood
15	chr6:166657400-166659000	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:166657600-166657800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:166657600-166657800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr6:166657600-166657800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:166657600-166657800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:166657600-166657800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
21	chr6:166657600-166657800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr6:166657600-166657800	Enhancers	Thymus	Thymus
23	chr6:166657600-166657800	Bivalent Enhancer	HepG2	liver
24	chr6:166657600-166657800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr6:166657600-166658000	Enhancers	Esophagus	oesophagus
26	chr6:166657600-166658200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:166657600-166658200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr6:166657600-166658200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:166657600-166658400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
30	chr6:166657600-166658400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:166657600-166658800	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr6:166657600-166658800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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