Variant report

Variant	rs7740044
Chromosome Location	chr6:166665154-166665155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166664955..166667590-chr6:166668357..166669935,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10223678	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10946138	0.97[ASN][1000 genomes]
rs10946140	0.97[ASN][1000 genomes]
rs10946141	0.97[ASN][1000 genomes]
rs1884958	0.97[ASN][1000 genomes]
rs1884959	0.87[ASN][1000 genomes]
rs1884960	0.97[ASN][1000 genomes]
rs1884961	0.97[ASN][1000 genomes]
rs2064880	0.87[ASN][1000 genomes]
rs35173009	0.97[ASN][1000 genomes]
rs4709107	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4710029	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6456063	0.97[ASN][1000 genomes]
rs6456064	0.97[ASN][1000 genomes]
rs6456065	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900299	0.87[ASN][1000 genomes]
rs6901921	0.87[ASN][1000 genomes]
rs6909730	0.82[ASN][1000 genomes]
rs6916613	0.97[ASN][1000 genomes]
rs6940605	0.87[ASN][1000 genomes]
rs7741146	0.97[ASN][1000 genomes]
rs7741297	0.97[ASN][1000 genomes]
rs7741819	0.97[ASN][1000 genomes]
rs7765783	0.97[ASN][1000 genomes]
rs7766299	0.97[ASN][1000 genomes]
rs9348100	0.97[ASN][1000 genomes]
rs9356448	0.91[ASN][1000 genomes]
rs9365973	1.00[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap];0.87[ASN][1000 genomes]
rs9365980	1.00[CHB][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7740044	TCTE3	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166655200-166666400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:166658400-166666400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:166663600-166669200	Enhancers	Dnd41	blood
4	chr6:166664200-166666400	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:166664200-166666400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:166664400-166665200	Weak transcription	Fetal Thymus	thymus
7	chr6:166664400-166666600	Enhancers	Primary B cells from cord blood	blood
8	chr6:166664600-166665200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:166664600-166665600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr6:166664600-166665600	Enhancers	GM12878-XiMat	blood
11	chr6:166664600-166666400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:166664600-166666400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:166664800-166665200	Enhancers	Primary B cells from peripheral blood	blood
14	chr6:166664800-166665200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:166664800-166665200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr6:166664800-166665600	Enhancers	Primary T cells from cord blood	blood
17	chr6:166665000-166665200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:166665000-166665200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:166665000-166665400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
20	chr6:166665000-166665400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr6:166665000-166665600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:166665000-166665600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
23	chr6:166665000-166666600	Enhancers	Thymus	Thymus

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