Variant report

Variant	rs10224455
Chromosome Location	chr7:140738796-140738797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10244762	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17161814	0.87[AFR][1000 genomes]
rs56095977	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58061904	0.89[AFR][1000 genomes]
rs59389100	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60596616	0.86[AFR][1000 genomes]
rs60763228	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61594049	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6972661	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73737152	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140737200-140745000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:140738400-140739200	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links