Variant report

Variant	rs58061904
Chromosome Location	chr7:140692381-140692382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140691584..140694675-chr7:140697932..140701117,4	MCF-7	breast:
2	chr7:140692108..140692959-chr7:142247279..142248015,2	MCF-7	breast:
3	chr7:140691421..140693902-chr7:140694734..140697135,2	K562	blood:
4	chr7:140096106..140096834-chr7:140692307..140693078,2	MCF-7	breast:
5	chr7:140675007..140675968-chr7:140692355..140692975,3	MCF-7	breast:
6	chr7:140641197..140642073-chr7:140692226..140693040,3	MCF-7	breast:
7	chr7:140674937..140676218-chr7:140692083..140692979,12	MCF-7	breast:
8	chr7:140624227..140625862-chr7:140690468..140692613,2	MCF-7	breast:
9	chr7:140672514..140673484-chr7:140692059..140692995,8	MCF-7	breast:
10	chr7:140672582..140673152-chr7:140692063..140692683,3	MCF-7	breast:
11	chr7:140641197..140642122-chr7:140692081..140693040,8	MCF-7	breast:
12	chr7:140691681..140693769-chr7:140707693..140710334,2	K562	blood:
13	chr7:140675000..140676654-chr7:140692083..140692972,8	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000242703	Chromatin interaction
ENSG00000090263	Chromatin interaction
ENSG00000157764	Chromatin interaction
ENSG00000211714	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10224455	0.89[AFR][1000 genomes]
rs10230145	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10244762	0.98[AFR][1000 genomes]
rs17161814	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56095977	0.98[AFR][1000 genomes]
rs59389100	0.98[AFR][1000 genomes]
rs60596616	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60763228	0.95[AFR][1000 genomes]
rs61594049	0.98[AFR][1000 genomes]
rs6972661	0.90[AFR][1000 genomes]
rs73737152	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140689200-140693000	Enhancers	HepG2	liver
2	chr7:140692200-140692600	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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