Variant report

Variant	rs73737152
Chromosome Location	chr7:140744672-140744673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10224455	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10244762	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17161814	0.88[AFR][1000 genomes]
rs56095977	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58061904	0.90[AFR][1000 genomes]
rs59389100	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60596616	0.87[AFR][1000 genomes]
rs60763228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61594049	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6972661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140737200-140745000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:140739400-140745000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:140742800-140745400	Enhancers	A549	lung
4	chr7:140743400-140744800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:140743400-140745600	Enhancers	Osteobl	bone
6	chr7:140744000-140745000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:140744000-140745000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:140744000-140749000	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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