Variant report

Variant	rs56095977
Chromosome Location	chr7:140729210-140729211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10224455	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230145	0.85[AFR][1000 genomes]
rs10244762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17161814	0.95[AFR][1000 genomes]
rs58061904	0.98[AFR][1000 genomes]
rs59389100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60596616	0.94[AFR][1000 genomes]
rs60763228	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61594049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6972661	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73737152	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140727400-140732400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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