Variant report
| Variant | rs10244762 |
|---|---|
| Chromosome Location | chr7:140719265-140719266 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr7:140719182-140719392 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MRPS33 | TF binding region |
| ENSG00000157764 | Chromatin interaction |
| ENSG00000090263 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10224455 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10230145 | 0.85[AFR][1000 genomes] |
| rs17161814 | 0.95[AFR][1000 genomes] |
| rs246743 | 0.81[ASW][hapmap] |
| rs56095977 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58061904 | 0.98[AFR][1000 genomes] |
| rs59389100 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60596616 | 0.94[AFR][1000 genomes] |
| rs60763228 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61594049 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6972661 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73737152 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017980 | chr7:140601863-140721368 | Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv1030195 | chr7:140615828-140746345 | Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
