Variant report

Variant	rs10224702
Chromosome Location	chr7:129384438-129384439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129377464..129380811-chr7:129382602..129385925,4	MCF-7	breast:
2	chr7:129382727..129384443-chr7:129387438..129389371,2	MCF-7	breast:
3	chr7:129384038..129386757-chr7:129399620..129402491,2	K562	blood:
4	chr7:129374523..129378775-chr7:129380102..129386585,8	K562	blood:
5	chr7:129381004..129383973-chr7:129384004..129385791,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10231985	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.80[ASN][1000 genomes]
rs10234904	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10238665	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10245818	0.82[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10250715	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10258498	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10274906	0.80[ASN][1000 genomes]
rs10276606	0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10279678	0.80[ASN][1000 genomes]
rs11487138	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs12670479	0.81[ASN][1000 genomes]
rs2402964	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs28480046	0.96[ASN][1000 genomes]
rs55853524	0.80[ASN][1000 genomes]
rs56099086	0.84[ASN][1000 genomes]
rs57241718	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60362426	0.81[ASN][1000 genomes]
rs62489268	0.80[ASN][1000 genomes]
rs6942490	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs6953077	0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[ASN][1000 genomes]
rs6955093	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6969098	0.84[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs6976507	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs73159622	0.83[ASN][1000 genomes]
rs7459234	0.83[ASN][1000 genomes]
rs753947	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7777812	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7792411	0.84[ASN][1000 genomes]
rs7796553	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7797729	0.87[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[ASN][1000 genomes]
rs7800226	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813824	chr7:129379450-129424461	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	364 gene(s)	inside rSNPs	diseases
2	esv14232	chr7:129379923-129445465	Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr7:129351600-129394800	Weak transcription	Hela-S3	cervix
3	chr7:129357000-129392400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:129360600-129394800	Weak transcription	Small Intestine	intestine
5	chr7:129361800-129392400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:129362200-129387800	Strong transcription	Liver	Liver
7	chr7:129364200-129397600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr7:129365200-129388400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:129366800-129399400	Weak transcription	Fetal Kidney	kidney
10	chr7:129369600-129399400	Weak transcription	Fetal Brain Male	brain
11	chr7:129372000-129390000	Weak transcription	HMEC	breast
12	chr7:129372200-129387000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:129372200-129390000	Weak transcription	NHEK	skin
14	chr7:129372200-129397800	Weak transcription	NH-A	brain
15	chr7:129372400-129398800	Weak transcription	NHLF	lung
16	chr7:129373400-129389200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr7:129373600-129385600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:129373800-129385200	Strong transcription	Duodenum Mucosa	Duodenum
19	chr7:129373800-129392000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr7:129374600-129394800	Weak transcription	Gastric	stomach
21	chr7:129374800-129386600	Weak transcription	Esophagus	oesophagus
22	chr7:129374800-129390000	Weak transcription	Colonic Mucosa	Colon
23	chr7:129375000-129386600	Weak transcription	GM12878-XiMat	blood
24	chr7:129375000-129390000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr7:129375000-129391600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:129375000-129394800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:129375000-129395400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:129375800-129392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:129376600-129384600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr7:129376600-129393000	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr7:129376600-129397200	Strong transcription	Dnd41	blood
32	chr7:129376800-129392200	Strong transcription	Primary T cells from cord blood	blood
33	chr7:129377000-129387800	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr7:129377200-129387200	Strong transcription	Fetal Stomach	stomach
35	chr7:129377200-129392800	Strong transcription	Thymus	Thymus
36	chr7:129377600-129387600	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr7:129378400-129386600	Weak transcription	Fetal Lung	lung
38	chr7:129379600-129386800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr7:129379600-129388200	Weak transcription	K562	blood
40	chr7:129379800-129384800	Strong transcription	Fetal Intestine Large	intestine
41	chr7:129379800-129400400	Weak transcription	HSMM	muscle
42	chr7:129380000-129385400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr7:129380000-129394800	Weak transcription	Colon Smooth Muscle	Colon
44	chr7:129380000-129397000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr7:129380000-129406600	Weak transcription	HSMMtube	muscle
46	chr7:129380200-129385800	Strong transcription	Fetal Intestine Small	intestine
47	chr7:129380400-129388200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:129380400-129394800	Weak transcription	A549	lung
49	chr7:129380600-129385200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr7:129380600-129386800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links