Variant report

Variant	rs6969098
Chromosome Location	chr7:129272359-129272360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129263344..129266051-chr7:129271795..129274722,2	MCF-7	breast:
2	chr7:129250986..129252643-chr7:129271502..129273458,2	MCF-7	breast:
3	chr7:129248798..129255309-chr7:129271058..129278292,15	MCF-7	breast:
4	chr7:129139139..129142160-chr7:129272114..129275915,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106459	Chromatin interaction
ENSG00000273329	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10224702	0.84[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10231985	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10234904	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs10245818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10256014	0.82[EUR][1000 genomes]
rs10258498	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10274906	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10276606	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10279678	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11487138	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2402964	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs28689822	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28889902	0.81[EUR][1000 genomes]
rs55853524	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55933630	0.81[EUR][1000 genomes]
rs56028831	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56099086	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56271323	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56889501	0.83[EUR][1000 genomes]
rs57241718	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58660194	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60362426	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62489268	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6942490	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6953077	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6961403	0.95[CEU][hapmap];0.82[CHB][hapmap]
rs6976507	0.95[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6979455	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73159612	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159622	0.92[ASN][1000 genomes]
rs7459234	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs753947	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7777812	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7782066	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7784920	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7792411	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7795187	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7796553	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7797729	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7800226	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7808752	0.82[EUR][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129297200	Weak transcription	Lung	lung
3	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
4	chr7:129253200-129283200	Weak transcription	HSMM	muscle
5	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
7	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
8	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
10	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
11	chr7:129256400-129274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:129256600-129284400	Weak transcription	HMEC	breast
14	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
15	chr7:129257600-129274400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:129257600-129282800	Weak transcription	Osteobl	bone
17	chr7:129257600-129288400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:129257800-129273000	Weak transcription	Brain Germinal Matrix	brain
19	chr7:129257800-129289000	Weak transcription	NHEK	skin
20	chr7:129257800-129297000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr7:129257800-129297000	Weak transcription	Fetal Intestine Large	intestine
22	chr7:129257800-129297200	Weak transcription	Aorta	Aorta
23	chr7:129258400-129272600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr7:129258400-129283000	Weak transcription	Fetal Thymus	thymus
25	chr7:129259000-129296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr7:129259200-129286200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr7:129260200-129273000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr7:129260200-129297200	Weak transcription	Fetal Intestine Small	intestine
29	chr7:129260400-129274600	Weak transcription	Liver	Liver
30	chr7:129262800-129297000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr7:129263200-129272600	Weak transcription	Primary T cells from cord blood	blood
32	chr7:129263600-129275200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr7:129265000-129275000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr7:129265200-129274600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:129265200-129297200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr7:129267000-129275200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr7:129267200-129278000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:129267200-129282600	Weak transcription	Primary B cells from cord blood	blood
39	chr7:129267400-129275200	Weak transcription	Brain Hippocampus Middle	brain
40	chr7:129267400-129278200	Weak transcription	Psoas Muscle	Psoas
41	chr7:129267600-129274800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr7:129267800-129275000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr7:129267800-129289000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:129269000-129274600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr7:129270000-129282600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:129270200-129275000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:129270200-129282600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr7:129270200-129282800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr7:129270200-129293000	Weak transcription	Primary B cells from peripheral blood	blood
50	chr7:129270400-129273200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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