Variant report

Variant	rs28689822
Chromosome Location	chr7:129266417-129266418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr7:129266293-129266627	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129251593..129253816-chr7:129265350..129268702,3	K562	blood:

Variant related genes	Relation type
NRF1	TF binding region
ENSG00000106459	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10231985	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10245818	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10256014	0.82[EUR][1000 genomes]
rs10274906	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10276606	0.88[ASN][1000 genomes]
rs10279678	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11487138	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28889902	0.81[EUR][1000 genomes]
rs55853524	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55933630	0.81[EUR][1000 genomes]
rs56028831	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56099086	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56271323	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56889501	0.83[EUR][1000 genomes]
rs57241718	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58660194	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60362426	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62489268	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6942490	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6953077	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6969098	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6976507	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6979455	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73159612	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73159622	0.90[ASN][1000 genomes]
rs7459234	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs753947	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7782066	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7784920	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7792411	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7795187	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7797729	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7800226	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7808752	0.82[EUR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129297200	Weak transcription	Lung	lung
3	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
4	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
6	chr7:129253200-129283200	Weak transcription	HSMM	muscle
7	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
10	chr7:129253800-129267400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
12	chr7:129254600-129267000	Weak transcription	Fetal Brain Female	brain
13	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
15	chr7:129255400-129267000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:129255600-129269000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
18	chr7:129256400-129267600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr7:129256400-129274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:129256600-129267200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:129256600-129269400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:129256600-129284400	Weak transcription	HMEC	breast
24	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
25	chr7:129257600-129269800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:129257600-129274400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:129257600-129282800	Weak transcription	Osteobl	bone
28	chr7:129257600-129288400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:129257800-129266800	Weak transcription	Adipose Nuclei	Adipose
30	chr7:129257800-129267800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:129257800-129273000	Weak transcription	Brain Germinal Matrix	brain
32	chr7:129257800-129289000	Weak transcription	NHEK	skin
33	chr7:129257800-129297000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr7:129257800-129297000	Weak transcription	Fetal Intestine Large	intestine
35	chr7:129257800-129297200	Weak transcription	Aorta	Aorta
36	chr7:129258400-129272600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:129258400-129283000	Weak transcription	Fetal Thymus	thymus
38	chr7:129258600-129271400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr7:129258800-129266800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:129259000-129269800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr7:129259000-129296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:129259200-129286200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr7:129260200-129269800	Weak transcription	A549	lung
44	chr7:129260200-129273000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr7:129260200-129297200	Weak transcription	Fetal Intestine Small	intestine
46	chr7:129260400-129274600	Weak transcription	Liver	Liver
47	chr7:129262200-129267000	Weak transcription	Primary B cells from cord blood	blood
48	chr7:129262800-129266800	Weak transcription	Ovary	ovary
49	chr7:129262800-129297000	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr7:129263000-129266600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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