Variant report

Variant	rs57241718
Chromosome Location	chr7:129313695-129313696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129311491..129314194-chr7:129329758..129331915,2	MCF-7	breast:
2	chr7:129308818..129311766-chr7:129311780..129314074,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10224702	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10231985	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10234904	0.83[ASN][1000 genomes]
rs10238665	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10245818	0.83[ASN][1000 genomes]
rs10250715	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10258498	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10274906	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10276606	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10279678	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11487138	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2402964	0.82[ASN][1000 genomes]
rs28689822	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55853524	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56028831	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56099086	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56271323	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58660194	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60362426	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62489268	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6953077	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6955093	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6969098	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6979455	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73159612	0.90[ASN][1000 genomes]
rs73159622	0.98[ASN][1000 genomes]
rs7459234	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs753947	0.81[ASN][1000 genomes]
rs7777812	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7782066	0.84[ASN][1000 genomes]
rs7784920	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7792411	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7795187	0.85[ASN][1000 genomes]
rs7796553	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7797729	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7800226	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129289200-129314000	Weak transcription	Fetal Brain Male	brain
3	chr7:129290000-129325800	Weak transcription	Stomach Mucosa	stomach
4	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
5	chr7:129300000-129314000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:129301000-129330200	Weak transcription	Gastric	stomach
7	chr7:129302000-129314200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:129302000-129314200	Weak transcription	Psoas Muscle	Psoas
9	chr7:129302000-129314200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:129302000-129314400	Weak transcription	Aorta	Aorta
11	chr7:129302000-129314600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr7:129302000-129314800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr7:129302000-129315400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr7:129302000-129317000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:129302000-129331800	Weak transcription	Esophagus	oesophagus
16	chr7:129303400-129314400	Weak transcription	Colonic Mucosa	Colon
17	chr7:129305000-129314600	Weak transcription	HSMMtube	muscle
18	chr7:129305000-129338200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:129305200-129314200	Weak transcription	Hela-S3	cervix
20	chr7:129305400-129313800	Weak transcription	Osteobl	bone
21	chr7:129305400-129314200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:129305400-129315000	Weak transcription	HUVEC	blood vessel
23	chr7:129305400-129315000	Weak transcription	NHDF-Ad	bronchial
24	chr7:129305600-129313800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:129307200-129352000	Weak transcription	NHLF	lung
26	chr7:129309600-129314800	Strong transcription	Primary T cells from cord blood	blood
27	chr7:129310200-129315000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr7:129310600-129316000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr7:129310600-129319200	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:129310800-129313800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:129311000-129313800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr7:129311000-129314200	Strong transcription	Primary B cells from cord blood	blood
33	chr7:129311000-129315000	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr7:129311000-129315000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:129311000-129316400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:129311000-129319400	Strong transcription	Primary B cells from peripheral blood	blood
37	chr7:129311200-129314400	Strong transcription	Fetal Stomach	stomach
38	chr7:129311200-129314400	Strong transcription	Right Ventricle	heart
39	chr7:129311200-129314600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr7:129311200-129314800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:129311200-129314800	Strong transcription	Liver	Liver
42	chr7:129311200-129314800	Strong transcription	Duodenum Mucosa	Duodenum
43	chr7:129311200-129315000	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr7:129311200-129315000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr7:129311200-129315000	Strong transcription	Brain Hippocampus Middle	brain
46	chr7:129311200-129315000	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr7:129311200-129315000	Weak transcription	Fetal Heart	heart
48	chr7:129311200-129315200	Strong transcription	A549	lung
49	chr7:129311200-129315400	Strong transcription	HepG2	liver
50	chr7:129311200-129315400	Strong transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links