Variant report

Variant	rs7795187
Chromosome Location	chr7:129253785-129253786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr7:129253763-129254068	HepG2	liver:	n/a	chr7:129253924-129253940 chr7:129253927-129253941
2	EGR1	chr7:129253451-129253790	K562	blood:	n/a	n/a
3	MAZ	chr7:129253560-129253811	K562	blood:	n/a	n/a
4	MAFK	chr7:129253752-129254062	HepG2	liver:	n/a	chr7:129253924-129253940 chr7:129253927-129253941
5	MAFF	chr7:129253768-129254063	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129040519..129043328-chr7:129251804..129254684,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273329	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10231985	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10245818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10256014	0.92[EUR][1000 genomes]
rs10274906	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10276606	0.85[ASN][1000 genomes]
rs10279678	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11487138	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28689822	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28889902	0.90[EUR][1000 genomes]
rs55853524	0.86[ASN][1000 genomes]
rs55933630	0.90[EUR][1000 genomes]
rs56028831	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56099086	0.85[ASN][1000 genomes]
rs56271323	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56889501	0.93[EUR][1000 genomes]
rs57241718	0.85[ASN][1000 genomes]
rs58660194	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60362426	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62489268	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6942490	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6953077	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6961403	0.87[EUR][1000 genomes]
rs6969098	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6976507	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6979455	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73159612	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73159622	0.86[ASN][1000 genomes]
rs7459234	0.86[ASN][1000 genomes]
rs753947	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7782066	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7784920	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7792411	0.85[ASN][1000 genomes]
rs7797729	0.85[ASN][1000 genomes]
rs7800226	0.81[ASN][1000 genomes]
rs7808752	0.92[EUR][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252600-129253800	Flanking Active TSS	Dnd41	blood
2	chr7:129252800-129255000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:129253000-129254000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr7:129253000-129254000	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr7:129253000-129254600	Enhancers	Fetal Brain Male	brain
7	chr7:129253000-129255200	Enhancers	Primary T cells fromperipheralblood	blood
8	chr7:129253000-129255200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:129253000-129256200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:129253000-129256200	Weak transcription	Aorta	Aorta
11	chr7:129253000-129259000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr7:129253000-129260200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:129253000-129262400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:129253000-129262400	Weak transcription	Ovary	ovary
15	chr7:129253000-129297200	Weak transcription	Lung	lung
16	chr7:129253200-129253800	Enhancers	Fetal Muscle Trunk	muscle
17	chr7:129253200-129253800	Enhancers	Fetal Stomach	stomach
18	chr7:129253200-129254000	Enhancers	Fetal Brain Female	brain
19	chr7:129253200-129254200	Enhancers	Left Ventricle	heart
20	chr7:129253200-129254400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:129253200-129254400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:129253200-129254400	Weak transcription	Brain Angular Gyrus	brain
23	chr7:129253200-129254600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:129253200-129254600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr7:129253200-129254600	Weak transcription	Fetal Intestine Small	intestine
26	chr7:129253200-129254600	Weak transcription	Fetal Kidney	kidney
27	chr7:129253200-129255000	Weak transcription	Colon Smooth Muscle	Colon
28	chr7:129253200-129255200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr7:129253200-129255200	Enhancers	Fetal Intestine Large	intestine
30	chr7:129253200-129255400	Enhancers	Fetal Thymus	thymus
31	chr7:129253200-129255600	Enhancers	Primary B cells from peripheral blood	blood
32	chr7:129253200-129255600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr7:129253200-129255800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr7:129253200-129256200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr7:129253200-129256200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:129253200-129256200	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr7:129253200-129256200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr7:129253200-129256200	Weak transcription	Pancreas	Pancrea
39	chr7:129253200-129256400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:129253200-129257200	Weak transcription	Psoas Muscle	Psoas
41	chr7:129253200-129257200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr7:129253200-129257400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr7:129253200-129257400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:129253200-129257600	Weak transcription	Right Atrium	heart
45	chr7:129253200-129257800	Enhancers	Primary hematopoietic stem cells	blood
46	chr7:129253200-129258400	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr7:129253200-129258800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr7:129253200-129259000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr7:129253200-129259400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr7:129253200-129260200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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