Variant report

Variant	rs6961403
Chromosome Location	chr7:129218091-129218092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10231985	0.84[CEU][hapmap];0.82[CHB][hapmap]
rs10245818	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs10256014	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11487138	0.84[CEU][hapmap]
rs28889902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55933630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56889501	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6942490	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs6953077	0.84[CEU][hapmap];0.82[CHB][hapmap]
rs6969098	0.95[CEU][hapmap];0.82[CHB][hapmap]
rs6976507	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes]
rs753947	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[GIH][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs7782066	0.85[EUR][1000 genomes]
rs7795187	0.87[EUR][1000 genomes]
rs7797729	0.84[CEU][hapmap];0.82[CHB][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap]
rs7800226	0.89[CEU][hapmap]
rs7808752	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6961403	OPN1SW	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129217600-129218200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:129217600-129218200	ZNF genes & repeats	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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