Variant report

Variant	rs10245818
Chromosome Location	chr7:129257508-129257509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129228150..129230324-chr7:129254634..129257789,3	MCF-7	breast:
2	chr7:129256866..129258455-chr7:129273026..129274955,2	K562	blood:
3	chr7:129217791..129220404-chr7:129255943..129258228,2	MCF-7	breast:
4	chr7:129256509..129259242-chr7:129259807..129261335,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10224702	0.82[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10231985	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10234904	0.84[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs10256014	0.91[EUR][1000 genomes]
rs10258498	0.83[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10274906	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10276606	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];0.89[MEX][hapmap];0.82[MKK][hapmap];0.83[ASN][1000 genomes]
rs10279678	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11487138	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2402964	0.83[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs28689822	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28889902	0.90[EUR][1000 genomes]
rs55853524	0.85[ASN][1000 genomes]
rs55933630	0.90[EUR][1000 genomes]
rs56028831	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56099086	0.83[ASN][1000 genomes]
rs56271323	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56889501	0.92[EUR][1000 genomes]
rs57241718	0.83[ASN][1000 genomes]
rs58660194	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60362426	0.86[ASN][1000 genomes]
rs62489268	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6942490	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.87[JPT][hapmap];0.84[LWK][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.90[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6953077	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[ASN][1000 genomes]
rs6961403	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs6969098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6976507	0.95[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6979455	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73159612	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73159622	0.85[ASN][1000 genomes]
rs7459234	0.85[ASN][1000 genomes]
rs753947	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7777812	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7782066	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7784920	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7792411	0.83[ASN][1000 genomes]
rs7795187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7796553	0.84[ASW][hapmap];0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7797729	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.83[ASN][1000 genomes]
rs7800226	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7808752	0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10245818	OPN1SW	cis	cerebellum	SCAN

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129259000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:129253000-129260200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:129253000-129262400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:129253000-129262400	Weak transcription	Ovary	ovary
6	chr7:129253000-129297200	Weak transcription	Lung	lung
7	chr7:129253200-129257600	Weak transcription	Right Atrium	heart
8	chr7:129253200-129257800	Enhancers	Primary hematopoietic stem cells	blood
9	chr7:129253200-129258400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr7:129253200-129258800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:129253200-129259000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr7:129253200-129259400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr7:129253200-129260200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr7:129253200-129260200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr7:129253200-129262200	Weak transcription	NH-A	brain
16	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
17	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
19	chr7:129253200-129283200	Weak transcription	HSMM	muscle
20	chr7:129253400-129257600	Enhancers	A549	lung
21	chr7:129253400-129258000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr7:129253400-129258400	Enhancers	Primary B cells from cord blood	blood
23	chr7:129253400-129258600	Enhancers	Primary T cells from cord blood	blood
24	chr7:129253400-129259800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr7:129253400-129260400	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr7:129253400-129264200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
30	chr7:129253800-129267400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
32	chr7:129254400-129257600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:129254400-129258200	Enhancers	Brain Angular Gyrus	brain
34	chr7:129254400-129259000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr7:129254600-129267000	Weak transcription	Fetal Brain Female	brain
36	chr7:129255000-129258000	Enhancers	Dnd41	blood
37	chr7:129255200-129259600	Weak transcription	Fetal Intestine Small	intestine
38	chr7:129255200-129260200	Enhancers	HepG2	liver
39	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
41	chr7:129255400-129267000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr7:129255600-129257800	Enhancers	NHEK	skin
43	chr7:129255600-129263000	Weak transcription	Fetal Heart	heart
44	chr7:129255600-129269000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
46	chr7:129255800-129257800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr7:129255800-129258200	Enhancers	K562	blood
48	chr7:129255800-129258400	Enhancers	Fetal Thymus	thymus
49	chr7:129255800-129259400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr7:129256200-129257600	Enhancers	HUES6 Cell Line	embryonic stem cell

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