Variant report

Variant	rs28889902
Chromosome Location	chr7:129219687-129219688
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10245818	0.90[EUR][1000 genomes]
rs10256014	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28689822	0.81[EUR][1000 genomes]
rs55933630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56028831	0.81[EUR][1000 genomes]
rs56271323	0.81[EUR][1000 genomes]
rs56889501	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6942490	0.96[EUR][1000 genomes]
rs6961403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6969098	0.81[EUR][1000 genomes]
rs6976507	0.96[EUR][1000 genomes]
rs753947	0.90[EUR][1000 genomes]
rs7782066	0.89[EUR][1000 genomes]
rs7795187	0.90[EUR][1000 genomes]
rs7808752	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129218200-129221000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:129219000-129223400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:129219200-129227600	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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