Variant report

Variant	rs10276606
Chromosome Location	chr7:129312570-129312571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129311491..129314194-chr7:129329758..129331915,2	MCF-7	breast:
2	chr7:129304389..129308303-chr7:129309570..129312767,4	K562	blood:
3	chr7:129308818..129311766-chr7:129311780..129314074,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10224702	0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10231985	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10234904	0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10238665	0.85[ASN][1000 genomes]
rs10245818	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];0.89[MEX][hapmap];0.82[MKK][hapmap];0.83[ASN][1000 genomes]
rs10250715	0.85[ASN][1000 genomes]
rs10258498	0.85[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10274906	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10279678	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11487138	0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2402964	0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs28689822	0.88[ASN][1000 genomes]
rs55853524	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56028831	0.90[ASN][1000 genomes]
rs56099086	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs56271323	0.90[ASN][1000 genomes]
rs57241718	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58660194	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60362426	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62489268	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6942490	0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap]
rs6953077	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6955093	0.85[ASN][1000 genomes]
rs6969098	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6976507	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs6979455	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73159612	0.90[ASN][1000 genomes]
rs73159622	0.98[ASN][1000 genomes]
rs7459234	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs753947	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.81[ASN][1000 genomes]
rs7777812	0.86[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.86[MKK][hapmap];0.84[ASN][1000 genomes]
rs7782066	0.84[ASN][1000 genomes]
rs7784920	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7792411	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7795187	0.85[ASN][1000 genomes]
rs7796553	0.86[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.86[MKK][hapmap];0.84[ASN][1000 genomes]
rs7797729	0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.84[MEX][hapmap];0.97[MKK][hapmap];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7800226	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10276606	OPN1SW	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129289200-129314000	Weak transcription	Fetal Brain Male	brain
3	chr7:129290000-129325800	Weak transcription	Stomach Mucosa	stomach
4	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
5	chr7:129300000-129314000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:129301000-129330200	Weak transcription	Gastric	stomach
7	chr7:129301200-129312600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:129302000-129314200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:129302000-129314200	Weak transcription	Psoas Muscle	Psoas
10	chr7:129302000-129314200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:129302000-129314400	Weak transcription	Aorta	Aorta
12	chr7:129302000-129314600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:129302000-129314800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:129302000-129315400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr7:129302000-129317000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:129302000-129331800	Weak transcription	Esophagus	oesophagus
17	chr7:129303400-129314400	Weak transcription	Colonic Mucosa	Colon
18	chr7:129305000-129314600	Weak transcription	HSMMtube	muscle
19	chr7:129305000-129338200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:129305200-129312600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:129305200-129314200	Weak transcription	Hela-S3	cervix
22	chr7:129305400-129313800	Weak transcription	Osteobl	bone
23	chr7:129305400-129314200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:129305400-129315000	Weak transcription	HUVEC	blood vessel
25	chr7:129305400-129315000	Weak transcription	NHDF-Ad	bronchial
26	chr7:129305600-129313800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:129307200-129352000	Weak transcription	NHLF	lung
28	chr7:129309600-129314800	Strong transcription	Primary T cells from cord blood	blood
29	chr7:129309800-129312600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr7:129310200-129315000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr7:129310600-129313000	Strong transcription	GM12878-XiMat	blood
32	chr7:129310600-129316000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:129310600-129319200	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr7:129310800-129313800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr7:129311000-129312800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr7:129311000-129313800	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr7:129311000-129314200	Strong transcription	Primary B cells from cord blood	blood
38	chr7:129311000-129315000	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr7:129311000-129315000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:129311000-129316400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:129311000-129319400	Strong transcription	Primary B cells from peripheral blood	blood
42	chr7:129311200-129312600	Strong transcription	Brain Anterior Caudate	brain
43	chr7:129311200-129312600	Strong transcription	Fetal Intestine Small	intestine
44	chr7:129311200-129312800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr7:129311200-129312800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr7:129311200-129312800	Strong transcription	K562	blood
47	chr7:129311200-129313000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr7:129311200-129313000	Strong transcription	Fetal Intestine Large	intestine
49	chr7:129311200-129313200	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr7:129311200-129313200	Strong transcription	Left Ventricle	heart

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