Variant report

Variant	rs58660194
Chromosome Location	chr7:129295571-129295572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129293462..129296171-chr7:129296988..129299418,3	K562	blood:

Variant related genes	Relation type
ENSG00000106459	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10231985	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10238665	0.81[ASN][1000 genomes]
rs10245818	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10250715	0.81[ASN][1000 genomes]
rs10258498	0.80[ASN][1000 genomes]
rs10274906	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10276606	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10279678	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11487138	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28689822	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55853524	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56028831	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56099086	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56271323	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57241718	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60362426	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62489268	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6953077	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6955093	0.81[ASN][1000 genomes]
rs6969098	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6979455	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73159612	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73159622	0.97[ASN][1000 genomes]
rs7459234	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs753947	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7777812	0.80[ASN][1000 genomes]
rs7782066	0.86[ASN][1000 genomes]
rs7784920	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7792411	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7795187	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7796553	0.80[ASN][1000 genomes]
rs7797729	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7800226	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129253000-129297200	Weak transcription	Lung	lung
2	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
3	chr7:129257800-129297000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:129257800-129297000	Weak transcription	Fetal Intestine Large	intestine
5	chr7:129257800-129297200	Weak transcription	Aorta	Aorta
6	chr7:129259000-129296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:129260200-129297200	Weak transcription	Fetal Intestine Small	intestine
8	chr7:129262800-129297000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:129265200-129297200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:129273400-129297000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr7:129275600-129297000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:129275600-129297200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:129275600-129297200	Weak transcription	HepG2	liver
14	chr7:129277000-129297200	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:129278400-129297000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr7:129279200-129296800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:129280600-129297000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr7:129281000-129297200	Weak transcription	Adipose Nuclei	Adipose
19	chr7:129282800-129297400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:129283400-129297200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:129283600-129297200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr7:129283600-129297200	Weak transcription	Gastric	stomach
23	chr7:129283800-129296800	Weak transcription	Dnd41	blood
24	chr7:129283800-129297200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr7:129284000-129297200	Weak transcription	Ovary	ovary
27	chr7:129284000-129297200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr7:129284000-129297200	Weak transcription	NHDF-Ad	bronchial
29	chr7:129284000-129297400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr7:129284000-129297600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:129284200-129297000	Weak transcription	Placenta	Placenta
32	chr7:129284600-129295600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:129284600-129296800	Weak transcription	HMEC	breast
34	chr7:129284600-129297200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:129284600-129297200	Weak transcription	HUVEC	blood vessel
36	chr7:129284600-129298200	Weak transcription	Brain Hippocampus Middle	brain
37	chr7:129285200-129297200	Weak transcription	Esophagus	oesophagus
38	chr7:129285400-129297400	Weak transcription	Brain Germinal Matrix	brain
39	chr7:129286600-129297600	Weak transcription	A549	lung
40	chr7:129286600-129299400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:129286600-129301600	Weak transcription	HSMMtube	muscle
42	chr7:129286800-129297000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr7:129286800-129297000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:129286800-129297000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr7:129286800-129297200	Weak transcription	Fetal Muscle Leg	muscle
46	chr7:129286800-129297200	Weak transcription	Right Ventricle	heart
47	chr7:129286800-129297200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr7:129286800-129297200	Weak transcription	Hela-S3	cervix
49	chr7:129286800-129297600	Weak transcription	HSMM	muscle
50	chr7:129286800-129304400	Weak transcription	NHLF	lung

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