Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:21464777..21466947-chr7:21524501..21526981,2	K562	blood:
2	chr7:21464898..21467027-chr7:21551635..21554348,2	K562	blood:
3	chr7:21457297..21459826-chr7:21464740..21467437,4	MCF-7	breast:
4	chr7:21455977..21463086-chr7:21463443..21469885,12	K562	blood:

Variant related genes	Relation type
ENSG00000266862	Chromatin interaction

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10046561	1.00[EUR][1000 genomes]
rs10216269	1.00[EUR][1000 genomes]
rs10228982	1.00[EUR][1000 genomes]
rs10234687	1.00[EUR][1000 genomes]
rs10235230	1.00[EUR][1000 genomes]
rs10250403	1.00[EUR][1000 genomes]
rs10250517	1.00[EUR][1000 genomes]
rs10252594	1.00[EUR][1000 genomes]
rs10254442	1.00[EUR][1000 genomes]
rs10258911	1.00[EUR][1000 genomes]
rs10259756	1.00[EUR][1000 genomes]
rs10265366	1.00[EUR][1000 genomes]
rs10268107	1.00[EUR][1000 genomes]
rs10275955	1.00[EUR][1000 genomes]
rs10279096	1.00[EUR][1000 genomes]
rs10282629	1.00[EUR][1000 genomes]
rs2158415	1.00[EUR][1000 genomes]
rs28439880	1.00[EUR][1000 genomes]
rs28490171	1.00[EUR][1000 genomes]
rs28528275	1.00[EUR][1000 genomes]
rs28646037	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28657649	1.00[EUR][1000 genomes]
rs28661383	1.00[EUR][1000 genomes]
rs55645999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55840028	1.00[EUR][1000 genomes]
rs55908918	1.00[EUR][1000 genomes]
rs58223300	1.00[EUR][1000 genomes]
rs6953601	1.00[EUR][1000 genomes]
rs6972886	1.00[EUR][1000 genomes]
rs73682368	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682608	1.00[EUR][1000 genomes]
rs73685128	1.00[EUR][1000 genomes]
rs73685129	1.00[EUR][1000 genomes]
rs73685130	1.00[EUR][1000 genomes]
rs73685131	1.00[EUR][1000 genomes]
rs73685134	1.00[EUR][1000 genomes]
rs73685135	1.00[EUR][1000 genomes]
rs73685138	1.00[EUR][1000 genomes]
rs73685144	1.00[EUR][1000 genomes]
rs73685152	1.00[EUR][1000 genomes]
rs73685154	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21458200-21466000	Weak transcription	Thymus	Thymus
2	chr7:21462200-21465600	Weak transcription	Fetal Thymus	thymus
3	chr7:21462200-21466000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:21463600-21465600	Weak transcription	K562	blood
5	chr7:21464600-21466000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:21464800-21465800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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