Variant report

Variant	rs10282629
Chromosome Location	chr7:21578808-21578809
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CREB1	chr7:21578452-21578922	GM12878	blood:	n/a	n/a
2	JUND	chr7:21578605-21578900	HepG2	liver:	n/a	n/a
3	RUNX3	chr7:21578506-21578825	GM12878	blood:	n/a	n/a
4	SPI1	chr7:21578738-21579136	GM12891	blood:	n/a	n/a
5	NFIC	chr7:21578410-21579196	GM12878	blood:	n/a	n/a
6	JUN	chr7:21578619-21578862	HepG2	liver:	n/a	chr7:21578753-21578766
7	SPI1	chr7:21578801-21579066	GM12878	blood:	n/a	n/a
8	SPI1	chr7:21578807-21579070	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
DNAH11	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10046561	1.00[EUR][1000 genomes]
rs10216269	1.00[EUR][1000 genomes]
rs10228982	1.00[EUR][1000 genomes]
rs10232146	1.00[EUR][1000 genomes]
rs10234687	1.00[EUR][1000 genomes]
rs10235230	1.00[EUR][1000 genomes]
rs10250403	1.00[EUR][1000 genomes]
rs10250517	1.00[EUR][1000 genomes]
rs10252594	1.00[EUR][1000 genomes]
rs10254442	1.00[EUR][1000 genomes]
rs10258911	1.00[EUR][1000 genomes]
rs10259756	1.00[EUR][1000 genomes]
rs10265366	1.00[EUR][1000 genomes]
rs10268107	1.00[EUR][1000 genomes]
rs10275955	1.00[EUR][1000 genomes]
rs10279096	1.00[EUR][1000 genomes]
rs2158415	1.00[EUR][1000 genomes]
rs28439880	1.00[EUR][1000 genomes]
rs28490171	1.00[EUR][1000 genomes]
rs28528275	1.00[EUR][1000 genomes]
rs28646037	1.00[EUR][1000 genomes]
rs28657649	1.00[EUR][1000 genomes]
rs28661383	1.00[EUR][1000 genomes]
rs55645999	1.00[EUR][1000 genomes]
rs55840028	1.00[EUR][1000 genomes]
rs55908918	1.00[EUR][1000 genomes]
rs58223300	1.00[EUR][1000 genomes]
rs6953601	1.00[EUR][1000 genomes]
rs6972886	1.00[EUR][1000 genomes]
rs73682368	1.00[EUR][1000 genomes]
rs73682608	1.00[EUR][1000 genomes]
rs73685128	1.00[EUR][1000 genomes]
rs73685129	1.00[EUR][1000 genomes]
rs73685130	1.00[EUR][1000 genomes]
rs73685131	1.00[EUR][1000 genomes]
rs73685134	1.00[EUR][1000 genomes]
rs73685135	1.00[EUR][1000 genomes]
rs73685138	1.00[EUR][1000 genomes]
rs73685144	1.00[EUR][1000 genomes]
rs73685152	1.00[EUR][1000 genomes]
rs73685154	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1028434	chr7:21468437-21636671	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1023655	chr7:21486485-21727016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv538801	chr7:21486485-21727016	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv830921	chr7:21489100-21688016	Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv1030577	chr7:21548909-21681379	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1025634	chr7:21566727-21686272	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21578800-21579600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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