Variant report

Variant	rs28646037
Chromosome Location	chr7:21456183-21456184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21455977..21463086-chr7:21463443..21469885,12	K562	blood:

Variant related genes	Relation type
ENSG00000105866	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10046561	1.00[EUR][1000 genomes]
rs10216269	1.00[EUR][1000 genomes]
rs10228982	1.00[EUR][1000 genomes]
rs10232146	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10234687	1.00[EUR][1000 genomes]
rs10235230	1.00[EUR][1000 genomes]
rs10250403	1.00[EUR][1000 genomes]
rs10250517	1.00[EUR][1000 genomes]
rs10252594	1.00[EUR][1000 genomes]
rs10254442	1.00[EUR][1000 genomes]
rs10258911	1.00[EUR][1000 genomes]
rs10259756	1.00[EUR][1000 genomes]
rs10265366	1.00[EUR][1000 genomes]
rs10268107	1.00[EUR][1000 genomes]
rs10275955	1.00[EUR][1000 genomes]
rs10279096	1.00[EUR][1000 genomes]
rs10282629	1.00[EUR][1000 genomes]
rs2158415	1.00[EUR][1000 genomes]
rs28439880	1.00[EUR][1000 genomes]
rs28490171	1.00[EUR][1000 genomes]
rs28528275	1.00[EUR][1000 genomes]
rs28657649	1.00[EUR][1000 genomes]
rs28661383	1.00[EUR][1000 genomes]
rs55645999	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55840028	1.00[EUR][1000 genomes]
rs55908918	1.00[EUR][1000 genomes]
rs58223300	1.00[EUR][1000 genomes]
rs6953601	1.00[EUR][1000 genomes]
rs6972886	1.00[EUR][1000 genomes]
rs73682368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682608	1.00[EUR][1000 genomes]
rs73685128	1.00[EUR][1000 genomes]
rs73685129	1.00[EUR][1000 genomes]
rs73685130	1.00[EUR][1000 genomes]
rs73685131	1.00[EUR][1000 genomes]
rs73685134	1.00[EUR][1000 genomes]
rs73685135	1.00[EUR][1000 genomes]
rs73685138	1.00[EUR][1000 genomes]
rs73685144	1.00[EUR][1000 genomes]
rs73685152	1.00[EUR][1000 genomes]
rs73685154	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21453400-21457400	Weak transcription	Primary T cells from cord blood	blood
2	chr7:21453600-21459600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr7:21454200-21457200	Weak transcription	Fetal Thymus	thymus
4	chr7:21454600-21457200	Weak transcription	Thymus	Thymus
5	chr7:21455000-21461800	Weak transcription	K562	blood
6	chr7:21455200-21461800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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