Variant report

Variant	rs10265366
Chromosome Location	chr7:21465696-21465697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:21464777..21466947-chr7:21524501..21526981,2	K562	blood:
2	chr7:21464898..21467027-chr7:21551635..21554348,2	K562	blood:
3	chr7:21457297..21459826-chr7:21464740..21467437,4	MCF-7	breast:
4	chr7:21465232..21467333-chr7:21480661..21482272,2	K562	blood:
5	chr7:21455977..21463086-chr7:21463443..21469885,12	K562	blood:

Variant related genes	Relation type
ENSG00000266862	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10046561	1.00[EUR][1000 genomes]
rs10216269	1.00[EUR][1000 genomes]
rs10227251	1.00[AMR][1000 genomes]
rs10228982	1.00[EUR][1000 genomes]
rs10232146	1.00[EUR][1000 genomes]
rs10234687	1.00[EUR][1000 genomes]
rs10235230	1.00[EUR][1000 genomes]
rs10238235	1.00[AMR][1000 genomes]
rs10250403	1.00[EUR][1000 genomes]
rs10250517	1.00[EUR][1000 genomes]
rs10252594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10254442	1.00[EUR][1000 genomes]
rs10258911	1.00[EUR][1000 genomes]
rs10259756	1.00[EUR][1000 genomes]
rs10268107	1.00[EUR][1000 genomes]
rs10275955	1.00[EUR][1000 genomes]
rs10279096	1.00[EUR][1000 genomes]
rs10282629	1.00[EUR][1000 genomes]
rs2158415	1.00[EUR][1000 genomes]
rs28439880	1.00[EUR][1000 genomes]
rs28490171	1.00[EUR][1000 genomes]
rs28528275	1.00[EUR][1000 genomes]
rs28646037	1.00[EUR][1000 genomes]
rs28657649	1.00[EUR][1000 genomes]
rs28661383	1.00[EUR][1000 genomes]
rs28872503	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55645999	1.00[EUR][1000 genomes]
rs55840028	1.00[EUR][1000 genomes]
rs55908918	1.00[EUR][1000 genomes]
rs58223300	1.00[EUR][1000 genomes]
rs6953601	1.00[EUR][1000 genomes]
rs6972886	1.00[EUR][1000 genomes]
rs73682368	1.00[EUR][1000 genomes]
rs73682608	1.00[EUR][1000 genomes]
rs73685128	1.00[EUR][1000 genomes]
rs73685129	1.00[EUR][1000 genomes]
rs73685130	1.00[EUR][1000 genomes]
rs73685131	1.00[EUR][1000 genomes]
rs73685134	1.00[EUR][1000 genomes]
rs73685135	1.00[EUR][1000 genomes]
rs73685138	1.00[EUR][1000 genomes]
rs73685144	1.00[EUR][1000 genomes]
rs73685152	1.00[EUR][1000 genomes]
rs73685154	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21458200-21466000	Weak transcription	Thymus	Thymus
2	chr7:21462200-21466000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr7:21464600-21466000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:21464800-21465800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:21465000-21466000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:21465200-21465800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:21465200-21466000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:21465400-21465800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:21465400-21466400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:21465600-21465800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:21465600-21465800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:21465600-21465800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:21465600-21465800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:21465600-21465800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr7:21465600-21465800	Enhancers	K562	blood
16	chr7:21465600-21465800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr7:21465600-21466000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr7:21465600-21466000	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr7:21465600-21466000	Enhancers	Primary B cells from cord blood	blood
20	chr7:21465600-21466000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:21465600-21466000	Enhancers	Brain Germinal Matrix	brain
22	chr7:21465600-21466200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr7:21465600-21466200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:21465600-21466200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr7:21465600-21466200	Enhancers	Placenta	Placenta
26	chr7:21465600-21466200	Enhancers	Fetal Thymus	thymus

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