Variant report

Variant	rs10252594
Chromosome Location	chr7:21406238-21406239
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21406112..21409082-chr7:21466622..21469405,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105866	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10046561	1.00[EUR][1000 genomes]
rs10216269	1.00[EUR][1000 genomes]
rs10227251	1.00[AMR][1000 genomes]
rs10228982	1.00[EUR][1000 genomes]
rs10232146	1.00[EUR][1000 genomes]
rs10234687	1.00[EUR][1000 genomes]
rs10235230	1.00[EUR][1000 genomes]
rs10238235	1.00[AMR][1000 genomes]
rs10250403	1.00[EUR][1000 genomes]
rs10250517	1.00[EUR][1000 genomes]
rs10254442	1.00[EUR][1000 genomes]
rs10258911	1.00[EUR][1000 genomes]
rs10259756	1.00[EUR][1000 genomes]
rs10265366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268107	1.00[EUR][1000 genomes]
rs10275955	1.00[EUR][1000 genomes]
rs10279096	1.00[EUR][1000 genomes]
rs10282629	1.00[EUR][1000 genomes]
rs2158415	1.00[EUR][1000 genomes]
rs28439880	1.00[EUR][1000 genomes]
rs28490171	1.00[EUR][1000 genomes]
rs28528275	1.00[EUR][1000 genomes]
rs28646037	1.00[EUR][1000 genomes]
rs28657649	1.00[EUR][1000 genomes]
rs28661383	1.00[EUR][1000 genomes]
rs28872503	1.00[AMR][1000 genomes]
rs55645999	1.00[EUR][1000 genomes]
rs55840028	1.00[EUR][1000 genomes]
rs55908918	1.00[EUR][1000 genomes]
rs58223300	1.00[EUR][1000 genomes]
rs6953601	1.00[EUR][1000 genomes]
rs6972886	1.00[EUR][1000 genomes]
rs73682368	1.00[EUR][1000 genomes]
rs73682608	1.00[EUR][1000 genomes]
rs73685128	1.00[EUR][1000 genomes]
rs73685129	1.00[EUR][1000 genomes]
rs73685130	1.00[EUR][1000 genomes]
rs73685131	1.00[EUR][1000 genomes]
rs73685134	1.00[EUR][1000 genomes]
rs73685135	1.00[EUR][1000 genomes]
rs73685138	1.00[EUR][1000 genomes]
rs73685144	1.00[EUR][1000 genomes]
rs73685152	1.00[EUR][1000 genomes]
rs73685154	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478244	chr7:21044211-21417347	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3478245	chr7:21044211-21417347	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1016705	chr7:21257416-21450943	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21405400-21406600	Enhancers	Fetal Intestine Small	intestine
2	chr7:21405400-21406600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr7:21405400-21406600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr7:21405400-21406800	Enhancers	Duodenum Mucosa	Duodenum
5	chr7:21405400-21406800	Enhancers	Fetal Intestine Large	intestine
6	chr7:21405400-21407000	Enhancers	HUVEC	blood vessel
7	chr7:21405400-21407200	Enhancers	Hela-S3	cervix
8	chr7:21405600-21406600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:21405600-21406600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr7:21405600-21406600	Enhancers	Primary hematopoietic stem cells	blood
11	chr7:21405600-21406600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr7:21405600-21406600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:21405600-21406600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:21405600-21406600	Enhancers	Stomach Mucosa	stomach
15	chr7:21405600-21406600	Enhancers	HepG2	liver
16	chr7:21405600-21406600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr7:21405600-21406800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr7:21405800-21406600	Enhancers	Primary T cells from cord blood	blood
19	chr7:21406000-21406400	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr7:21406000-21406800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr7:21406200-21406400	Flanking Active TSS	A549	lung

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