Variant report

Variant	rs10232744
Chromosome Location	chr7:121954860-121954861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10267574	1.00[AMR][1000 genomes]
rs10271420	1.00[AMR][1000 genomes]
rs10280031	1.00[AMR][1000 genomes]
rs28626173	1.00[AMR][1000 genomes]
rs9655839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121952000-121955000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121952000-121955600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:121952200-121955000	Weak transcription	Gastric	stomach
4	chr7:121952200-121955000	Weak transcription	Pancreas	Pancrea
5	chr7:121954600-121955000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
6	chr7:121954600-121955200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
7	chr7:121954600-121956800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
8	chr7:121954800-121955000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
9	chr7:121954800-121955000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr7:121954800-121955000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:121954800-121955400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:121954800-121955400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr7:121954800-121956400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
14	chr7:121954800-121956800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
15	chr7:121954800-121956800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr7:121954800-121957400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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