Variant report

Variant	rs28626173
Chromosome Location	chr7:121984486-121984487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10232744	1.00[AMR][1000 genomes]
rs10267574	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271420	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10280031	1.00[AMR][1000 genomes]
rs9655839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-121990800	Weak transcription	Pancreas	Pancrea
2	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:121958800-121994400	Weak transcription	Lung	lung
4	chr7:121962600-121993000	Weak transcription	Ovary	ovary
5	chr7:121974400-121987200	Weak transcription	Fetal Intestine Large	intestine
6	chr7:121980800-122018600	Weak transcription	Left Ventricle	heart
7	chr7:121983200-121984800	Enhancers	Brain Germinal Matrix	brain
8	chr7:121983400-121985800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:121983800-121984800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:121983800-121984800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:121983800-121985200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:121984000-121984800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:121984000-121985200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:121984000-121985400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:121984000-121985600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr7:121984200-121985000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr7:121984200-121997800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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