Variant report

Variant	rs10280031
Chromosome Location	chr7:121976475-121976476
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121974539..121977437-chr7:121978464..121982359,3	K562	blood:
2	chr7:121974539..121977319-chr7:121978464..121980966,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10232744	1.00[AMR][1000 genomes]
rs10253755	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs10267574	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271420	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275722	1.00[ASW][hapmap];0.83[MKK][hapmap];0.84[YRI][hapmap]
rs28626173	1.00[AMR][1000 genomes]
rs9655839	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9656292	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-121977600	Weak transcription	Gastric	stomach
2	chr7:121957400-121990800	Weak transcription	Pancreas	Pancrea
3	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:121958800-121994400	Weak transcription	Lung	lung
5	chr7:121961200-121980400	Weak transcription	Left Ventricle	heart
6	chr7:121962600-121993000	Weak transcription	Ovary	ovary
7	chr7:121971000-121977400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:121974400-121987200	Weak transcription	Fetal Intestine Large	intestine
9	chr7:121975800-121978200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:121975800-121978200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:121976000-121977600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr7:121976200-121976600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:121976200-121976800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:121976200-121977600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:121976200-121978200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:121976400-121976600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:121976400-121977400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:121976400-121977800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr7:121976400-121978000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr7:121976400-121978200	Enhancers	HUES48 Cell Line	embryonic stem cell

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