Variant report

Variant	rs9655839
Chromosome Location	chr7:121983633-121983634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10232744	1.00[AMR][1000 genomes]
rs10253755	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs10267574	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271420	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275722	0.84[YRI][hapmap]
rs10277674	0.80[YRI][hapmap]
rs10280031	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28626173	1.00[AMR][1000 genomes]
rs9656292	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-121990800	Weak transcription	Pancreas	Pancrea
2	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:121958800-121994400	Weak transcription	Lung	lung
4	chr7:121962600-121993000	Weak transcription	Ovary	ovary
5	chr7:121974400-121987200	Weak transcription	Fetal Intestine Large	intestine
6	chr7:121978200-121984000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:121980800-122018600	Weak transcription	Left Ventricle	heart
8	chr7:121983200-121984800	Enhancers	Brain Germinal Matrix	brain
9	chr7:121983400-121984200	Enhancers	Fetal Lung	lung
10	chr7:121983400-121985800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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