Variant report

Variant	rs10271420
Chromosome Location	chr7:121974393-121974394
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10232744	1.00[AMR][1000 genomes]
rs10253755	0.93[YRI][hapmap]
rs10267574	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275722	0.84[YRI][hapmap]
rs10277674	0.80[YRI][hapmap]
rs10280031	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28626173	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9655839	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9656292	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-121977600	Weak transcription	Gastric	stomach
2	chr7:121957400-121990800	Weak transcription	Pancreas	Pancrea
3	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:121958800-121994400	Weak transcription	Lung	lung
5	chr7:121961200-121980400	Weak transcription	Left Ventricle	heart
6	chr7:121962600-121993000	Weak transcription	Ovary	ovary
7	chr7:121969000-121976200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:121970800-121976400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:121971000-121975800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:121971000-121976200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:121971000-121976200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:121971000-121976400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:121971000-121977400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:121971200-121975800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:121971200-121976400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:121971400-121976400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:121972800-121976200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:121974200-121974400	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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