Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10215484	1.00[ASN][1000 genomes]
rs10226240	1.00[ASN][1000 genomes]
rs10242603	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10244523	1.00[ASN][1000 genomes]
rs10247917	1.00[ASN][1000 genomes]
rs10260118	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10262109	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10262440	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10263697	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10263742	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10263874	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10268905	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275166	1.00[ASN][1000 genomes]
rs10281297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971648	1.00[ASN][1000 genomes]
rs11973813	1.00[ASN][1000 genomes]
rs11980387	1.00[ASN][1000 genomes]
rs17143855	1.00[ASN][1000 genomes]
rs2402588	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28841701	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28886379	1.00[ASN][1000 genomes]
rs2896309	1.00[ASN][1000 genomes]
rs57075189	1.00[ASN][1000 genomes]
rs6949130	1.00[ASN][1000 genomes]
rs7793636	1.00[ASN][1000 genomes]
rs7797647	1.00[ASN][1000 genomes]
rs994803	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121436400-121444000	Enhancers	NHEK	skin
2	chr7:121439200-121444000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:121439600-121443800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:121440200-121443800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:121440600-121450400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:121441600-121443400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:121442600-121443800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:121442800-121443400	Enhancers	Fetal Brain Female	brain
9	chr7:121443200-121443400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:121443200-121443600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:121443200-121443600	Enhancers	HMEC	breast
12	chr7:121443200-121458800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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