Variant report
| Variant | rs10281297 |
|---|---|
| Chromosome Location | chr7:121453762-121453763 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:121450903..121454570-chr7:121456571..121459517,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10215484 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10226240 | 1.00[ASN][1000 genomes] |
| rs10234968 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10242603 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10244523 | 1.00[ASN][1000 genomes] |
| rs10247917 | 1.00[ASN][1000 genomes] |
| rs10260118 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10262109 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10262440 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10263697 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10263742 | 1.00[ASN][1000 genomes] |
| rs10263874 | 1.00[ASN][1000 genomes] |
| rs10268905 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10275166 | 1.00[ASN][1000 genomes] |
| rs11971648 | 1.00[ASN][1000 genomes] |
| rs11973813 | 1.00[ASN][1000 genomes] |
| rs11980387 | 1.00[ASN][1000 genomes] |
| rs17143855 | 1.00[ASN][1000 genomes] |
| rs2402588 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28841701 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28886379 | 0.96[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2896309 | 1.00[ASN][1000 genomes] |
| rs57075189 | 1.00[ASN][1000 genomes] |
| rs6949130 | 1.00[ASN][1000 genomes] |
| rs7793636 | 1.00[ASN][1000 genomes] |
| rs7797647 | 1.00[ASN][1000 genomes] |
| rs994803 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429808 | chr7:121384049-121600049 | Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:121443200-121458800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr7:121451800-121456000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
