Variant report
| Variant | rs2896309 |
|---|---|
| Chromosome Location | chr7:121431954-121431955 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10215484 | 1.00[ASN][1000 genomes] |
| rs10226240 | 1.00[ASN][1000 genomes] |
| rs10234968 | 1.00[ASN][1000 genomes] |
| rs10242603 | 1.00[ASN][1000 genomes] |
| rs10244523 | 1.00[ASN][1000 genomes] |
| rs10247917 | 1.00[ASN][1000 genomes] |
| rs10260118 | 1.00[ASN][1000 genomes] |
| rs10262109 | 1.00[ASN][1000 genomes] |
| rs10262440 | 1.00[ASN][1000 genomes] |
| rs10263697 | 1.00[ASN][1000 genomes] |
| rs10263742 | 1.00[ASN][1000 genomes] |
| rs10263874 | 1.00[ASN][1000 genomes] |
| rs10268905 | 1.00[ASN][1000 genomes] |
| rs10275166 | 1.00[ASN][1000 genomes] |
| rs10281297 | 1.00[ASN][1000 genomes] |
| rs11971648 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11973813 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11980387 | 1.00[ASN][1000 genomes] |
| rs17143855 | 1.00[ASN][1000 genomes] |
| rs2402588 | 1.00[ASN][1000 genomes] |
| rs28841701 | 1.00[ASN][1000 genomes] |
| rs28886379 | 1.00[ASN][1000 genomes] |
| rs57075189 | 1.00[ASN][1000 genomes] |
| rs6949130 | 1.00[ASN][1000 genomes] |
| rs6970897 | 0.90[CEU][hapmap] |
| rs7793636 | 1.00[ASN][1000 genomes] |
| rs7797647 | 1.00[ASN][1000 genomes] |
| rs994803 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032054 | chr7:120926379-121432971 | Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv539103 | chr7:120926379-121432971 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 3 | nsv429808 | chr7:121384049-121600049 | Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:121401200-121434000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr7:121426600-121436200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
