Variant report

Variant	rs1023549
Chromosome Location	chr10:118606810-118606811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118606549..118608975-chr10:118626771..118628550,2	MCF-7	breast:
2	chr10:118594427..118597319-chr10:118605038..118606851,2	MCF-7	breast:
3	chr10:118596184..118600317-chr10:118606262..118608808,4	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1023550	1.00[CEU][hapmap]
rs1023551	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1023552	1.00[CEU][hapmap]
rs1637570	0.82[CHB][hapmap]
rs1681752	1.00[CEU][hapmap];0.91[TSI][hapmap]
rs2627197	0.82[CHB][hapmap]
rs9421246	1.00[CEU][hapmap];0.91[TSI][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1023549	PNLIPRP2	cis	cerebellum	SCAN
rs1023549	KIAA1598	cis	lymphoblastoid	seeQTL
rs1023549	KIAA1598	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118587400-118607800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:118590800-118607800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:118593800-118607600	Weak transcription	Pancreas	Pancrea
4	chr10:118594800-118607200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:118595000-118608000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:118596200-118607600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:118598200-118608200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:118599000-118608000	Weak transcription	A549	lung
9	chr10:118599400-118607800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:118599400-118607800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:118599400-118608000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:118600600-118607600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:118603200-118607400	Weak transcription	HMEC	breast
14	chr10:118605400-118607600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:118605600-118607200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:118605600-118607400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:118605600-118608400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:118606600-118607200	Enhancers	Brain Angular Gyrus	brain
19	chr10:118606800-118607200	Enhancers	GM12878-XiMat	blood
20	chr10:118606800-118608200	Enhancers	Primary B cells from peripheral blood	blood
21	chr10:118606800-118608200	Enhancers	Stomach Mucosa	stomach

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