Variant report

Variant	rs1023552
Chromosome Location	chr10:118607579-118607580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:118607451-118609603	GM12878	blood:	n/a	n/a
2	PAX5	chr10:118607423-118607850	GM12878	blood:	n/a	n/a
3	POLR2A	chr10:118607410-118609749	GM19193	blood:	n/a	n/a
4	RUNX3	chr10:118607412-118608614	GM12878	blood:	n/a	n/a
5	RELA	chr10:118607352-118608230	GM10847	blood:	n/a	n/a
6	SPI1	chr10:118607418-118608345	GM12878	blood:	n/a	chr10:118608114-118608121
7	SPI1	chr10:118607432-118608243	GM12891	blood:	n/a	chr10:118608114-118608121
8	RUNX3	chr10:118607390-118607926	GM12878	blood:	n/a	n/a
9	POLR2A	chr10:118606833-118609969	GM12891	blood:	n/a	n/a
10	RELA	chr10:118607191-118608546	GM19193	blood:	n/a	n/a
11	TBL1XR1	chr10:118607539-118607929	GM12878	blood:	n/a	n/a
12	RELA	chr10:118607209-118608425	GM12891	blood:	n/a	n/a
13	SP1	chr10:118607423-118607935	GM12878	blood:	n/a	n/a
14	ZEB1	chr10:118607440-118607845	GM12878	blood:	n/a	n/a
15	POU2F2	chr10:118607377-118607855	GM12891	blood:	n/a	chr10:118607610-118607618 chr10:118607606-118607621 chr10:118607609-118607620 chr10:118607609-118607619 chr10:118607608-118607618 chr10:118607606-118607619 chr10:118607608-118607618
16	SPI1	chr10:118607427-118608294	GM12891	blood:	n/a	chr10:118608114-118608121
17	SP1	chr10:118607470-118607874	GM12878	blood:	n/a	n/a
18	TAF1	chr10:118607558-118607997	GM12878	blood:	n/a	n/a
19	RELA	chr10:118607421-118608239	GM15510	blood:	n/a	n/a
20	WRNIP1	chr10:118607198-118608425	GM12878	blood:	n/a	n/a
21	ATF2	chr10:118607416-118608030	GM12878	blood:	n/a	n/a
22	POLR2A	chr10:118607517-118608028	GM12892	blood:	n/a	n/a
23	RELA	chr10:118607280-118609211	GM18951	blood:	n/a	n/a
24	NFIC	chr10:118607436-118608030	GM12878	blood:	n/a	n/a
25	POLR2A	chr10:118607578-118607884	GM12878	blood:	n/a	n/a
26	EP300	chr10:118607541-118608016	GM12878	blood:	n/a	n/a
27	RCOR1	chr10:118607537-118608102	GM12878	blood:	n/a	n/a
28	POLR2A	chr10:118607405-118609690	GM18505	blood:	n/a	n/a
29	PAX5	chr10:118607425-118607817	GM12891	blood:	n/a	n/a
30	POU2F2	chr10:118607358-118607946	GM12891	blood:	n/a	chr10:118607610-118607618 chr10:118607606-118607621 chr10:118607609-118607620 chr10:118607609-118607619 chr10:118607608-118607618 chr10:118607606-118607619 chr10:118607608-118607618
31	BCLAF1	chr10:118607397-118608089	GM12878	blood:	n/a	n/a
32	RELA	chr10:118607490-118608116	GM12878	blood:	n/a	n/a
33	POLR2A	chr10:118607272-118609687	Raji	blood:	n/a	n/a
34	PAX5	chr10:118607342-118607984	GM12878	blood:	n/a	n/a
35	POLR2A	chr10:118607498-118609900	GM19099	blood:	n/a	n/a
36	RELA	chr10:118607472-118608890	GM19099	blood:	n/a	n/a
37	MTA3	chr10:118607330-118608413	GM12878	blood:	n/a	n/a
38	EP300	chr10:118607498-118608002	GM12878	blood:	n/a	n/a
39	CHD2	chr10:118607545-118608125	GM12878	blood:	n/a	n/a
40	EBF1	chr10:118607498-118607942	GM12878	blood:	n/a	n/a
41	PAX5	chr10:118607470-118607847	GM12878	blood:	n/a	n/a
42	RELA	chr10:118607478-118608367	GM18505	blood:	n/a	n/a
43	POLR2A	chr10:118607579-118607985	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118606549..118608975-chr10:118626771..118628550,2	MCF-7	breast:
2	chr10:118596184..118600317-chr10:118606262..118608808,4	MCF-7	breast:

Variant related genes	Relation type
ENO4	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1023549	1.00[CEU][hapmap]
rs1023550	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1023551	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1681752	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2170862	0.82[ASN][1000 genomes]
rs4752015	0.84[ASN][1000 genomes]
rs7083543	0.86[ASN][1000 genomes]
rs7087685	0.86[ASN][1000 genomes]
rs9420215	0.84[ASN][1000 genomes]
rs9421246	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9421248	0.86[ASN][1000 genomes]
rs9421249	0.82[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118587400-118607800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:118590800-118607800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:118593800-118607600	Weak transcription	Pancreas	Pancrea
4	chr10:118595000-118608000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:118596200-118607600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:118598200-118608200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:118599000-118608000	Weak transcription	A549	lung
8	chr10:118599400-118607800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:118599400-118607800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:118599400-118608000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:118600600-118607600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:118605400-118607600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:118605600-118608400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:118606800-118608200	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:118606800-118608200	Enhancers	Stomach Mucosa	stomach
16	chr10:118607000-118607800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr10:118607000-118608000	Enhancers	Fetal Intestine Large	intestine
18	chr10:118607200-118607800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr10:118607200-118607800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
20	chr10:118607200-118607800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr10:118607200-118607800	Enhancers	Brain Germinal Matrix	brain
22	chr10:118607200-118608000	Active TSS	Brain Angular Gyrus	brain
23	chr10:118607200-118608200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:118607200-118608200	Enhancers	Fetal Intestine Small	intestine
25	chr10:118607200-118608400	Flanking Active TSS	GM12878-XiMat	blood
26	chr10:118607400-118607600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr10:118607400-118607600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:118607400-118607800	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr10:118607400-118607800	Enhancers	HMEC	breast
30	chr10:118607400-118608000	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr10:118607400-118608200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:118607400-118608200	Bivalent Enhancer	Fetal Thymus	thymus
33	chr10:118607400-118608600	Enhancers	Spleen	Spleen
34	chr10:118607400-118609400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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