Variant report

Variant	rs9420215
Chromosome Location	chr10:118620777-118620778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118610746..118612605-chr10:118620170..118622659,2	MCF-7	breast:
2	chr10:118607956..118610219-chr10:118618457..118621328,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225302	Chromatin interaction
ENSG00000188316	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1023552	0.84[ASN][1000 genomes]
rs11197834	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs1419832	0.90[MEX][hapmap]
rs1637570	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1637571	0.84[EUR][1000 genomes]
rs1637572	1.00[CEU][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1681752	0.82[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs1905538	0.81[MEX][hapmap]
rs1905544	0.85[MEX][hapmap]
rs2118207	0.81[MEX][hapmap]
rs2170862	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2257791	0.83[YRI][hapmap]
rs2627197	0.84[CEU][hapmap];0.85[GIH][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs4752015	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7083543	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7087685	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs740600	0.90[MEX][hapmap]
rs7896612	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9421246	0.82[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs9421248	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9421249	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9421250	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs9420215	TIAL1	cis	parietal	SCAN
rs9420215	PNLIPRP2	cis	cerebellum	SCAN
rs9420215	KIAA1598	cis	cerebellum	SCAN
rs9420215	DKFZp781N1041	cis	multi-tissue	Pritchard
rs9420215	KIAA1598	cis	multi-tissue	Pritchard
rs9420215	KIAA1598	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118617800-118626800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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