Variant report

Variant	rs1419832
Chromosome Location	chr10:118670282-118670283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118663647..118665511-chr10:118669117..118672054,2	MCF-7	breast:
2	chr10:118669411..118671708-chr10:118673236..118675988,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10218905	0.86[CHD][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs10510025	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10787735	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10886016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10886017	0.89[EUR][1000 genomes]
rs10886021	0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap]
rs11197863	0.93[ASW][hapmap];0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1122688	0.80[CEU][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs11593277	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11598817	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12769006	0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1637570	0.89[JPT][hapmap]
rs1637572	0.93[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.80[AMR][1000 genomes]
rs1905538	1.00[ASW][hapmap];0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1905542	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1905544	0.93[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2101264	0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2118207	0.93[ASW][hapmap];0.80[CEU][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2170862	0.90[MEX][hapmap]
rs2257791	0.90[CEU][hapmap];0.92[TSI][hapmap]
rs2531685	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2531686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2531689	0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2531690	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2627194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2627197	0.93[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap]
rs3781566	0.81[MEX][hapmap]
rs4092881	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4638225	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6585422	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7074047	0.91[ASN][1000 genomes]
rs7077565	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7079724	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7083142	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7087685	0.95[MEX][hapmap]
rs7089699	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs719012	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs740600	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7903295	0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs879255	0.86[MEX][hapmap]
rs9420215	0.90[MEX][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1419832	KIAA1598	cis	cerebellum	SCAN
rs1419832	KIAA1598	cis	Whole Blood	GTEx
rs1419832	PNLIPRP2	cis	cerebellum	SCAN
rs1419832	DKFZp781N1041	cis	multi-tissue	Pritchard
rs1419832	KIAA1598	cis	multi-tissue	Pritchard

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118637600-118670400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:118642600-118670400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:118645400-118673200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:118647400-118680000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:118649200-118670400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:118649200-118681200	Weak transcription	Stomach Mucosa	stomach
8	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
9	chr10:118651800-118670600	Weak transcription	HSMMtube	muscle
10	chr10:118651800-118689800	Weak transcription	HSMM	muscle
11	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:118652000-118671600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:118653000-118679600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:118653200-118672600	Weak transcription	Gastric	stomach
16	chr10:118653200-118679200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:118653200-118684600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:118654400-118677200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:118654400-118692200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:118655000-118692400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr10:118655800-118671200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:118657800-118673600	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:118659000-118671600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:118659000-118671800	Weak transcription	Lung	lung
27	chr10:118659200-118682000	Weak transcription	Left Ventricle	heart
28	chr10:118659200-118697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:118659200-118697800	Weak transcription	Fetal Stomach	stomach
30	chr10:118659400-118670400	Weak transcription	Brain Angular Gyrus	brain
31	chr10:118660400-118688200	Weak transcription	Fetal Kidney	kidney
32	chr10:118661800-118673200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr10:118661800-118680200	Weak transcription	HMEC	breast
34	chr10:118662600-118678000	Weak transcription	K562	blood
35	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr10:118664000-118684800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr10:118664600-118690600	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr10:118664600-118693200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:118665000-118682600	Weak transcription	Colonic Mucosa	Colon
40	chr10:118665200-118682200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:118665600-118672600	Weak transcription	NHEK	skin
42	chr10:118665800-118679400	Weak transcription	Adipose Nuclei	Adipose
43	chr10:118666600-118671200	Weak transcription	NH-A	brain
44	chr10:118666600-118686400	Weak transcription	HUVEC	blood vessel
45	chr10:118666800-118672400	Weak transcription	A549	lung
46	chr10:118666800-118676400	Weak transcription	Brain Germinal Matrix	brain
47	chr10:118667000-118671600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:118667000-118672400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:118667000-118679200	Weak transcription	Pancreas	Pancrea
50	chr10:118667200-118670400	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links