Variant report

Variant	rs12769006
Chromosome Location	chr10:118776306-118776307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118762342..118765000-chr10:118775190..118777306,2	K562	blood:

Variant related genes	Relation type
ENSG00000187164	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10218905	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10510025	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10787735	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10886016	0.80[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10886021	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1122688	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11593277	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11598817	0.86[EUR][1000 genomes]
rs1419832	0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1637570	0.85[JPT][hapmap]
rs1637572	0.91[JPT][hapmap]
rs1905538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1905542	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1905544	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2101264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2118207	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2531685	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2531686	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2531688	0.82[YRI][hapmap]
rs2531689	0.85[CHB][hapmap];0.89[JPT][hapmap];0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2627194	0.81[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs2627197	0.91[JPT][hapmap]
rs3781566	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs4092881	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4638225	0.85[EUR][1000 genomes]
rs6585422	0.85[EUR][1000 genomes]
rs7074047	0.81[EUR][1000 genomes]
rs7077565	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7079724	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7083142	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7089699	0.84[EUR][1000 genomes]
rs719012	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs740600	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7901788	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7903295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs879255	0.83[CEU][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755506	chr10:118748764-118800107	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12769006	KIAA1598	cis	Whole Blood	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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