Variant report

Variant	rs7083142
Chromosome Location	chr10:118733562-118733563
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10218905	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10510025	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10787735	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10886016	0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10886017	0.84[EUR][1000 genomes]
rs10886021	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11197861	0.81[EUR][1000 genomes]
rs11197863	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1122688	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11593277	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11598817	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12769006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1419832	0.85[ASW][hapmap];0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.91[MKK][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1637570	0.95[JPT][hapmap];0.90[YRI][hapmap]
rs1637572	1.00[ASW][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs1905538	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1905539	0.82[EUR][1000 genomes]
rs1905542	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1905544	0.85[ASW][hapmap];0.89[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2101264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118207	0.85[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2257791	0.82[TSI][hapmap]
rs2531685	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2531686	0.80[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2531689	0.85[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2531690	0.88[ASN][1000 genomes]
rs2627194	0.80[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2627197	1.00[ASW][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs3781566	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs4092881	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4638225	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6585422	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7074047	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7077565	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7079724	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7089699	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs719012	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs740600	0.85[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.90[MKK][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7901788	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7903295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs879255	0.83[CEU][hapmap];0.83[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7083142	DKFZp781N1041	cis	multi-tissue	Pritchard
rs7083142	KIAA1598	cis	Whole Blood	GTEx
rs7083142	KIAA1598	cis	multi-tissue	Pritchard

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:118699200-118740600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:118699200-118748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:118700000-118736800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:118703400-118737000	Weak transcription	Aorta	Aorta
6	chr10:118703600-118740000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:118703600-118752200	Weak transcription	Gastric	stomach
8	chr10:118708000-118735600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:118708200-118734000	Weak transcription	HSMM	muscle
10	chr10:118708200-118744000	Weak transcription	K562	blood
11	chr10:118708600-118736200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:118711000-118735600	Weak transcription	Pancreas	Pancrea
13	chr10:118711000-118739600	Weak transcription	Fetal Stomach	stomach
14	chr10:118711200-118740000	Weak transcription	Adipose Nuclei	Adipose
15	chr10:118721600-118764000	Weak transcription	Ovary	ovary
16	chr10:118723200-118740000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:118724000-118737800	Weak transcription	Lung	lung
18	chr10:118725200-118736800	Weak transcription	Fetal Intestine Large	intestine
19	chr10:118725200-118763000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:118725600-118740600	Weak transcription	Fetal Intestine Small	intestine
21	chr10:118726400-118735600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:118727600-118743400	Weak transcription	HepG2	liver
23	chr10:118728200-118735600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr10:118728400-118735600	Weak transcription	Liver	Liver
25	chr10:118728600-118733600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:118728600-118734800	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr10:118730400-118736800	Enhancers	Brain Cingulate Gyrus	brain
28	chr10:118730400-118736800	Enhancers	Brain Hippocampus Middle	brain
29	chr10:118730600-118734400	Enhancers	Brain Angular Gyrus	brain
30	chr10:118730600-118735200	Enhancers	Brain Substantia Nigra	brain
31	chr10:118730600-118739800	Enhancers	Fetal Brain Male	brain
32	chr10:118730800-118735600	Enhancers	Brain Anterior Caudate	brain
33	chr10:118731200-118734000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:118731600-118736600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:118731800-118733800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:118732000-118736000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr10:118732000-118736400	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr10:118732200-118733600	Enhancers	Hela-S3	cervix
39	chr10:118732200-118735000	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr10:118732200-118736400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:118732200-118738400	Weak transcription	HSMMtube	muscle
42	chr10:118732400-118733800	Weak transcription	Fetal Lung	lung
43	chr10:118732400-118735000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:118732600-118733600	Enhancers	HUVEC	blood vessel
45	chr10:118732800-118733600	Flanking Active TSS	Brain Germinal Matrix	brain
46	chr10:118732800-118734800	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr10:118732800-118735000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr10:118732800-118735000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:118732800-118735000	Enhancers	HMEC	breast
50	chr10:118733000-118733600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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