Variant report

Variant	rs7077565
Chromosome Location	chr10:118715366-118715367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118713475..118716396-chr10:118722367..118725080,2	K562	blood:
2	chr10:118714040..118715856-chr10:118762627..118764628,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10218905	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10510025	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10787735	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10886016	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10886017	0.88[EUR][1000 genomes]
rs10886021	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11197863	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1122688	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11593277	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11598817	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12769006	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1419832	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1905538	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1905542	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1905544	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2101264	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2118207	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2531685	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2531686	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2531689	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2531690	0.92[ASN][1000 genomes]
rs2627194	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3781566	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4092881	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4638225	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6585422	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7074047	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7079724	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7083142	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7089699	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs719012	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs740600	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7901788	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7902527	0.83[EUR][1000 genomes]
rs7903295	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs879255	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7077565	KIAA1598	cis	Whole Blood	GTEx

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:118699200-118724200	Weak transcription	Fetal Intestine Small	intestine
3	chr10:118699200-118740600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:118699200-118748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:118700000-118736800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:118701000-118733400	Weak transcription	Fetal Kidney	kidney
7	chr10:118702400-118727200	Weak transcription	Stomach Mucosa	stomach
8	chr10:118703200-118721000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:118703400-118720600	Weak transcription	Fetal Brain Male	brain
10	chr10:118703400-118737000	Weak transcription	Aorta	Aorta
11	chr10:118703600-118740000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:118703600-118752200	Weak transcription	Gastric	stomach
13	chr10:118703800-118720800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:118704200-118716600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr10:118704200-118721000	Weak transcription	Ovary	ovary
16	chr10:118704200-118726600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:118707800-118721000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:118708000-118719200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:118708000-118719200	Weak transcription	NH-A	brain
20	chr10:118708000-118719600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:118708000-118725800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:118708000-118726600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:118708000-118735600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:118708200-118730800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:118708200-118733200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:118708200-118734000	Weak transcription	HSMM	muscle
27	chr10:118708200-118744000	Weak transcription	K562	blood
28	chr10:118708600-118736200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr10:118710800-118731000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:118711000-118724600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:118711000-118724600	Weak transcription	HepG2	liver
32	chr10:118711000-118727000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:118711000-118735600	Weak transcription	Pancreas	Pancrea
34	chr10:118711000-118739600	Weak transcription	Fetal Stomach	stomach
35	chr10:118711200-118715400	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr10:118711200-118718000	Weak transcription	Brain Germinal Matrix	brain
37	chr10:118711200-118724600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:118711200-118724600	Weak transcription	Fetal Intestine Large	intestine
39	chr10:118711200-118732600	Weak transcription	HUVEC	blood vessel
40	chr10:118711200-118740000	Weak transcription	Adipose Nuclei	Adipose
41	chr10:118711400-118716800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr10:118711400-118720000	Weak transcription	Fetal Brain Female	brain
43	chr10:118711800-118732200	Weak transcription	Hela-S3	cervix
44	chr10:118713000-118732800	Weak transcription	HMEC	breast
45	chr10:118713200-118719000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:118713600-118726600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr10:118713800-118721000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:118713800-118724800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:118713800-118732800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:118714000-118716400	Enhancers	Brain Anterior Caudate	brain

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