Variant report

Variant	rs11598817
Chromosome Location	chr10:118693862-118693863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118682595..118684245-chr10:118691155..118694125,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10218905	1.00[CEU][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs10510025	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10787735	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10886016	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10886017	0.92[EUR][1000 genomes]
rs10886021	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11197863	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.82[MEX][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1122688	1.00[CEU][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs11593277	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12769006	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs1419832	0.93[ASW][hapmap];0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1637570	0.95[JPT][hapmap]
rs1637572	0.86[ASW][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap]
rs1905538	0.93[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1905542	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1905544	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2101264	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2118207	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.81[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2170862	0.90[MEX][hapmap]
rs2257791	0.92[TSI][hapmap]
rs2531685	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2531686	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2531689	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2531690	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2627194	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2627197	0.86[ASW][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap]
rs3781566	0.83[CEU][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap]
rs4092881	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4638225	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4751614	0.81[EUR][1000 genomes]
rs4752018	0.80[EUR][1000 genomes]
rs6585422	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074047	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077565	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7079724	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083142	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7087685	0.86[MEX][hapmap]
rs7089699	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719012	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs740600	0.93[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7901788	0.80[EUR][1000 genomes]
rs7903295	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs879255	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs9420215	0.91[MEX][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11598817	PNLIPRP2	cis	cerebellum	SCAN
rs11598817	KIAA1598	cis	Whole Blood	GTEx
rs11598817	DKFZp781N1041	cis	multi-tissue	Pritchard
rs11598817	KIAA1598	cis	multi-tissue	Pritchard

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
3	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:118659200-118697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:118659200-118697800	Weak transcription	Fetal Stomach	stomach
9	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:118667200-118698800	Weak transcription	Placenta	Placenta
11	chr10:118667400-118703200	Weak transcription	Aorta	Aorta
12	chr10:118671000-118702800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:118672000-118698000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:118673000-118698600	Weak transcription	Gastric	stomach
15	chr10:118673000-118706400	Weak transcription	NH-A	brain
16	chr10:118673800-118706400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:118674200-118697800	Weak transcription	Fetal Intestine Small	intestine
18	chr10:118674400-118694400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:118675000-118706600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:118678000-118706600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr10:118679800-118698600	Weak transcription	Adipose Nuclei	Adipose
22	chr10:118680000-118698000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:118680000-118699000	Weak transcription	K562	blood
24	chr10:118680000-118706800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:118680400-118698400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:118680400-118698800	Weak transcription	NHEK	skin
27	chr10:118680800-118698200	Weak transcription	Ovary	ovary
28	chr10:118680800-118703200	Weak transcription	HMEC	breast
29	chr10:118681000-118698000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:118681000-118698600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:118681000-118698800	Weak transcription	Hela-S3	cervix
32	chr10:118686800-118698200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr10:118687200-118698000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:118687200-118706600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:118687600-118697600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:118688000-118696200	Weak transcription	Brain Hippocampus Middle	brain
37	chr10:118688200-118696000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:118688400-118702600	Weak transcription	HUVEC	blood vessel
39	chr10:118689800-118702800	Weak transcription	HepG2	liver
40	chr10:118690200-118699400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:118690200-118706400	Weak transcription	HSMM	muscle
42	chr10:118690400-118697800	Weak transcription	Fetal Intestine Large	intestine
43	chr10:118691800-118694000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:118691800-118697800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr10:118691800-118698600	Weak transcription	Brain Angular Gyrus	brain
46	chr10:118691800-118698600	Weak transcription	Lung	lung
47	chr10:118692000-118697800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:118692000-118697800	Weak transcription	Pancreas	Pancrea
49	chr10:118692000-118698000	Weak transcription	Brain Anterior Caudate	brain
50	chr10:118692000-118698800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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