Variant report

Variant	rs10886017
Chromosome Location	chr10:118672531-118672532
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10218905	0.94[CEU][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs10510025	0.94[CEU][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs10787735	0.84[EUR][1000 genomes]
rs10886016	0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs10886021	0.84[CEU][hapmap]
rs11197863	0.94[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs1122688	0.94[CEU][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs11593277	0.81[EUR][1000 genomes]
rs11598817	0.92[EUR][1000 genomes]
rs12769006	0.94[CEU][hapmap]
rs1419832	0.95[GIH][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs1637572	0.81[GIH][hapmap]
rs1905538	0.94[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs1905542	0.85[EUR][1000 genomes]
rs1905544	0.84[CEU][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs2101264	0.94[CEU][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs2118207	0.94[CEU][hapmap];0.90[GIH][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs2170862	0.81[JPT][hapmap]
rs2257791	0.84[TSI][hapmap]
rs2531685	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs2531686	0.84[EUR][1000 genomes]
rs2531689	0.88[EUR][1000 genomes]
rs2531690	0.80[EUR][1000 genomes]
rs2627194	0.91[EUR][1000 genomes]
rs3781566	0.88[CEU][hapmap]
rs4092881	0.88[EUR][1000 genomes]
rs4638225	0.92[EUR][1000 genomes]
rs4751614	0.85[AMR][1000 genomes]
rs4752018	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6585422	0.91[EUR][1000 genomes]
rs7074047	0.80[EUR][1000 genomes]
rs7077565	0.88[EUR][1000 genomes]
rs7079724	0.92[EUR][1000 genomes]
rs7083142	0.84[EUR][1000 genomes]
rs7087685	0.81[JPT][hapmap]
rs7089699	0.90[EUR][1000 genomes]
rs719012	0.94[EUR][1000 genomes]
rs740600	0.94[CEU][hapmap];0.95[GIH][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes]
rs7902527	0.84[AMR][1000 genomes]
rs7903295	0.94[CEU][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs879255	0.88[CEU][hapmap]
rs9420215	0.81[JPT][hapmap]
rs9421250	0.81[JPT][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10886017	FAM160B1	cis	parietal	SCAN
rs10886017	PNLIPRP2	cis	cerebellum	SCAN
rs10886017	KIAA1598	cis	Whole Blood	GTEx
rs10886017	KIAA1598	cis	multi-tissue	Pritchard
rs10886017	DKFZp781N1041	cis	multi-tissue	Pritchard
rs10886017	C10orf81	cis	cerebellum	SCAN

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118645400-118673200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:118647400-118680000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:118649200-118681200	Weak transcription	Stomach Mucosa	stomach
5	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
6	chr10:118651800-118689800	Weak transcription	HSMM	muscle
7	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:118653000-118679600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:118653200-118672600	Weak transcription	Gastric	stomach
11	chr10:118653200-118679200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:118653200-118684600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:118654400-118677200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:118654400-118692200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:118655000-118692400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr10:118657800-118673600	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:118659200-118682000	Weak transcription	Left Ventricle	heart
20	chr10:118659200-118697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:118659200-118697800	Weak transcription	Fetal Stomach	stomach
22	chr10:118660400-118688200	Weak transcription	Fetal Kidney	kidney
23	chr10:118661800-118673200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:118661800-118680200	Weak transcription	HMEC	breast
25	chr10:118662600-118678000	Weak transcription	K562	blood
26	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:118664000-118684800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:118664600-118690600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr10:118664600-118693200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:118665000-118682600	Weak transcription	Colonic Mucosa	Colon
31	chr10:118665200-118682200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:118665600-118672600	Weak transcription	NHEK	skin
33	chr10:118665800-118679400	Weak transcription	Adipose Nuclei	Adipose
34	chr10:118666600-118686400	Weak transcription	HUVEC	blood vessel
35	chr10:118666800-118676400	Weak transcription	Brain Germinal Matrix	brain
36	chr10:118667000-118679200	Weak transcription	Pancreas	Pancrea
37	chr10:118667200-118672800	Weak transcription	Hela-S3	cervix
38	chr10:118667200-118673400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:118667200-118679400	Weak transcription	Ovary	ovary
40	chr10:118667200-118698800	Weak transcription	Placenta	Placenta
41	chr10:118667400-118703200	Weak transcription	Aorta	Aorta
42	chr10:118669400-118675000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:118669400-118675000	Strong transcription	Fetal Intestine Large	intestine
44	chr10:118669600-118675000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:118670200-118675200	Enhancers	Fetal Brain Female	brain
46	chr10:118670200-118679800	Enhancers	Fetal Brain Male	brain
47	chr10:118670400-118672600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:118670400-118673200	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr10:118670400-118673600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:118670400-118674600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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