Variant report

Variant	rs11197863
Chromosome Location	chr10:118745667-118745668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118745589..118747161-chr10:118762227..118764656,2	K562	blood:
2	chr10:118743755..118746739-chr10:118763137..118765069,2	K562	blood:
3	chr10:118738451..118741295-chr10:118744110..118745939,2	K562	blood:

Variant related genes	Relation type
ENSG00000187164	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10218905	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10510025	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10787735	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10886016	0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10886017	0.85[EUR][1000 genomes]
rs10886021	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11197861	0.81[EUR][1000 genomes]
rs1122688	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11593277	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11598817	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12769006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1419832	0.93[ASW][hapmap];0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1637570	0.95[JPT][hapmap]
rs1637572	0.86[ASW][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap]
rs1905538	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1905539	0.83[EUR][1000 genomes]
rs1905542	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1905544	1.00[ASW][hapmap];0.89[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2101264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2118207	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2257791	0.85[TSI][hapmap]
rs2531685	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2531686	0.80[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2531689	0.85[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2531690	0.84[ASN][1000 genomes]
rs2627194	0.80[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2627197	0.86[ASW][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs3781566	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs4092881	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4638225	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6585422	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7074047	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7077565	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7079724	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7083142	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7089699	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs719012	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs740600	0.93[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.88[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7901788	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7903295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs879255	0.83[CEU][hapmap];0.83[JPT][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11197863	PNLIPRP2	cis	cerebellum	SCAN
rs11197863	KIAA1598	cis	Whole Blood	GTEx
rs11197863	DKFZp781N1041	cis	multi-tissue	Pritchard
rs11197863	KIAA1598	cis	multi-tissue	Pritchard

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118699200-118748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:118703600-118752200	Weak transcription	Gastric	stomach
3	chr10:118721600-118764000	Weak transcription	Ovary	ovary
4	chr10:118725200-118763000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:118734200-118748200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:118735000-118752000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:118735000-118762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:118736200-118751400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:118736400-118753000	Weak transcription	Liver	Liver
10	chr10:118737200-118750000	Weak transcription	A549	lung
11	chr10:118737200-118762800	Weak transcription	NHEK	skin
12	chr10:118737400-118760200	Weak transcription	Pancreas	Pancrea
13	chr10:118738800-118749200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:118738800-118762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:118739000-118748200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:118739200-118750000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr10:118739400-118748200	Weak transcription	Brain Germinal Matrix	brain
18	chr10:118739400-118750800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:118739600-118748200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:118739800-118748400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr10:118741000-118756400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:118743200-118746600	Enhancers	Brain Hippocampus Middle	brain
23	chr10:118743400-118745800	Enhancers	HepG2	liver
24	chr10:118743400-118748200	Weak transcription	Fetal Brain Male	brain
25	chr10:118744200-118746800	Enhancers	Brain Cingulate Gyrus	brain
26	chr10:118744400-118747600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:118744400-118748200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:118744600-118748600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr10:118744600-118749000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:118744600-118749000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:118744600-118749000	Weak transcription	Brain Anterior Caudate	brain
32	chr10:118744800-118747400	Enhancers	HUVEC	blood vessel
33	chr10:118744800-118748200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr10:118744800-118748400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:118744800-118748600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:118745000-118746800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:118745000-118748200	Weak transcription	Brain Angular Gyrus	brain
38	chr10:118745000-118748200	Weak transcription	Fetal Intestine Small	intestine
39	chr10:118745000-118760400	Weak transcription	K562	blood
40	chr10:118745400-118748200	Weak transcription	Fetal Intestine Large	intestine
41	chr10:118745600-118748200	Weak transcription	Brain Substantia Nigra	brain
42	chr10:118745600-118751800	Weak transcription	Hela-S3	cervix

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