Variant report

Variant	rs10510025
Chromosome Location	chr10:118650996-118650997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118647239..118651488-chr10:118651970..118654207,4	MCF-7	breast:
2	chr10:118637537..118640975-chr10:118647484..118651676,4	K562	blood:
3	chr10:118607571..118610860-chr10:118647249..118651335,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225302	Chromatin interaction
ENSG00000188316	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10218905	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap];0.95[LWK][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10787735	0.84[EUR][1000 genomes]
rs10886016	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10886017	0.89[EUR][1000 genomes]
rs10886021	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11197863	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1122688	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11593277	0.81[EUR][1000 genomes]
rs11598817	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12769006	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1419832	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1637570	0.95[JPT][hapmap]
rs1637572	0.93[CHD][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap]
rs1905538	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs1905542	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1905544	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2101264	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2118207	1.00[CEU][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2257791	0.92[TSI][hapmap]
rs2531685	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2531686	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531689	0.90[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2531690	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2627194	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2627197	0.93[CHD][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap]
rs3781566	1.00[ASW][hapmap];0.83[CEU][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4092881	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4638225	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6585422	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7074047	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7077565	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7079724	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7083142	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7087685	0.87[GIH][hapmap];0.80[MEX][hapmap]
rs7089699	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs719012	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs740600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901788	0.83[AFR][1000 genomes]
rs7903295	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs879255	0.83[CEU][hapmap];0.83[JPT][hapmap];0.89[LWK][hapmap];0.90[MEX][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10510025	KIAA1598	cis	Whole Blood	GTEx
rs10510025	PNLIPRP2	cis	cerebellum	SCAN
rs10510025	KIAA1598	cis	cerebellum	SCAN

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118637200-118658800	Weak transcription	Pancreas	Pancrea
2	chr10:118637600-118670400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:118639000-118666600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:118640800-118651600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:118641800-118658800	Weak transcription	K562	blood
6	chr10:118641800-118665200	Weak transcription	HepG2	liver
7	chr10:118641800-118665400	Weak transcription	Fetal Brain Female	brain
8	chr10:118642600-118652800	Weak transcription	Fetal Brain Male	brain
9	chr10:118642600-118670400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:118643800-118651000	Weak transcription	Brain Anterior Caudate	brain
11	chr10:118645400-118673200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:118646400-118652400	Weak transcription	Fetal Kidney	kidney
13	chr10:118646800-118652800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:118647200-118651000	Weak transcription	Brain Germinal Matrix	brain
15	chr10:118647200-118652800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:118647400-118680000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:118648200-118652800	Weak transcription	Gastric	stomach
18	chr10:118648600-118652600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:118648600-118652600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:118648800-118651600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:118648800-118652400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:118648800-118652600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr10:118648800-118652800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:118648800-118659000	Weak transcription	Fetal Intestine Large	intestine
25	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:118649000-118652400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:118649000-118652600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:118649200-118651600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr10:118649200-118652600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:118649200-118652600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr10:118649200-118652800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:118649200-118658800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:118649200-118658800	Weak transcription	Liver	Liver
34	chr10:118649200-118670400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:118649200-118681200	Weak transcription	Stomach Mucosa	stomach
36	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
37	chr10:118649400-118651000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr10:118649400-118658600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:118649400-118665000	Weak transcription	NHEK	skin
40	chr10:118649400-118665200	Weak transcription	Hela-S3	cervix
41	chr10:118649600-118651200	Enhancers	Fetal Muscle Leg	muscle
42	chr10:118649600-118652600	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr10:118649600-118652800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:118649600-118655800	Weak transcription	A549	lung
45	chr10:118649800-118651400	Weak transcription	Brain Substantia Nigra	brain
46	chr10:118650000-118651200	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr10:118650000-118653400	Enhancers	Brain Hippocampus Middle	brain
48	chr10:118650200-118651000	Enhancers	Brain Angular Gyrus	brain
49	chr10:118650200-118651200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:118650200-118651800	Enhancers	HSMMtube	muscle

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