Variant report

Variant	rs719012
Chromosome Location	chr10:118689195-118689196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118682934..118686649-chr10:118687334..118691249,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10218905	0.84[CEU][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs10510025	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10787735	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10886016	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10886017	0.94[EUR][1000 genomes]
rs10886021	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11197863	0.80[ASW][hapmap];0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1122688	0.84[CEU][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs11593277	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11598817	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12769006	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1419832	0.86[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.95[MKK][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1637570	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1637572	0.93[ASW][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap]
rs1905538	0.86[ASW][hapmap];0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MKK][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1905542	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1905544	0.80[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2101264	0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2118207	0.84[CEU][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257791	0.84[TSI][hapmap]
rs2531685	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2531686	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2531689	0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2531690	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2627194	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2627197	0.93[ASW][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap]
rs3781566	0.82[JPT][hapmap]
rs4092881	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4638225	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4752018	0.82[EUR][1000 genomes]
rs6585422	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7074047	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7077565	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7079724	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7083142	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7089699	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs740600	0.86[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MKK][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7901788	0.81[EUR][1000 genomes]
rs7903295	0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs879255	0.82[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs719012	KIAA1598	cis	Whole Blood	GTEx

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
3	chr10:118651800-118689800	Weak transcription	HSMM	muscle
4	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr10:118654400-118692200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:118655000-118692400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:118659200-118697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:118659200-118697800	Weak transcription	Fetal Stomach	stomach
12	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:118664600-118690600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:118664600-118693200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:118667200-118698800	Weak transcription	Placenta	Placenta
16	chr10:118667400-118703200	Weak transcription	Aorta	Aorta
17	chr10:118671000-118702800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:118672000-118698000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:118673000-118698600	Weak transcription	Gastric	stomach
20	chr10:118673000-118706400	Weak transcription	NH-A	brain
21	chr10:118673600-118691400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:118673800-118706400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr10:118674200-118691600	Weak transcription	Lung	lung
24	chr10:118674200-118697800	Weak transcription	Fetal Intestine Small	intestine
25	chr10:118674400-118694400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr10:118675000-118706600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:118678000-118706600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr10:118679800-118698600	Weak transcription	Adipose Nuclei	Adipose
29	chr10:118680000-118691600	Weak transcription	Pancreas	Pancrea
30	chr10:118680000-118698000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:118680000-118699000	Weak transcription	K562	blood
32	chr10:118680000-118706800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:118680400-118698400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:118680400-118698800	Weak transcription	NHEK	skin
35	chr10:118680800-118698200	Weak transcription	Ovary	ovary
36	chr10:118680800-118703200	Weak transcription	HMEC	breast
37	chr10:118681000-118689800	Weak transcription	Brain Anterior Caudate	brain
38	chr10:118681000-118691600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:118681000-118691600	Weak transcription	Brain Germinal Matrix	brain
40	chr10:118681000-118691600	Weak transcription	Fetal Brain Female	brain
41	chr10:118681000-118698000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:118681000-118698600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr10:118681000-118698800	Weak transcription	Hela-S3	cervix
44	chr10:118684800-118691600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:118685400-118691600	Weak transcription	Fetal Brain Male	brain
46	chr10:118685800-118690600	Strong transcription	Liver	Liver
47	chr10:118685800-118692800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:118686600-118691600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr10:118686800-118698200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr10:118687200-118691400	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links