Variant report

Variant	rs2531689
Chromosome Location	chr10:118665788-118665789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10218905	0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs10510025	0.90[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10787735	0.86[EUR][1000 genomes]
rs10886016	0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10886017	0.88[EUR][1000 genomes]
rs10886021	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs11197863	0.85[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1122688	0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs11593277	0.81[ASN][1000 genomes]
rs11598817	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12769006	0.85[CHB][hapmap];0.89[JPT][hapmap];0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1419832	0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1637570	0.93[JPT][hapmap]
rs1637572	0.83[JPT][hapmap];0.81[AMR][1000 genomes]
rs1905538	0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs1905542	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1905544	0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2101264	0.85[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2118207	0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2257791	0.82[EUR][1000 genomes]
rs2531685	0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2531686	0.90[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2531687	0.85[YRI][hapmap]
rs2531688	0.88[YRI][hapmap];0.84[AFR][1000 genomes]
rs2531690	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2627194	0.90[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2627197	0.83[JPT][hapmap]
rs4092881	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4638225	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6585422	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7074047	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7077565	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7079724	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7083142	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7089699	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs719012	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs740600	0.90[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7903295	0.85[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2531689	KIAA1598	cis	Whole Blood	GTEx

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118637600-118670400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:118639000-118666600	Weak transcription	Fetal Intestine Small	intestine
3	chr10:118642600-118670400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:118645400-118673200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:118647400-118680000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:118649200-118670400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:118649200-118681200	Weak transcription	Stomach Mucosa	stomach
9	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
10	chr10:118651800-118665800	Weak transcription	NH-A	brain
11	chr10:118651800-118670600	Weak transcription	HSMMtube	muscle
12	chr10:118651800-118689800	Weak transcription	HSMM	muscle
13	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:118652000-118671600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:118653000-118679600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:118653200-118666600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:118653200-118672600	Weak transcription	Gastric	stomach
19	chr10:118653200-118679200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:118653200-118684600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:118653400-118667200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr10:118654000-118665800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:118654400-118677200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:118654400-118692200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:118655000-118692400	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr10:118655800-118671200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr10:118657800-118673600	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:118658800-118668600	Strong transcription	Liver	Liver
31	chr10:118659000-118667000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:118659000-118671600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:118659000-118671800	Weak transcription	Lung	lung
34	chr10:118659200-118666600	Weak transcription	Aorta	Aorta
35	chr10:118659200-118682000	Weak transcription	Left Ventricle	heart
36	chr10:118659200-118697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:118659200-118697800	Weak transcription	Fetal Stomach	stomach
38	chr10:118659400-118665800	Weak transcription	Pancreas	Pancrea
39	chr10:118659400-118667000	Weak transcription	Brain Substantia Nigra	brain
40	chr10:118659400-118670400	Weak transcription	Brain Angular Gyrus	brain
41	chr10:118660000-118666600	Weak transcription	Ovary	ovary
42	chr10:118660400-118688200	Weak transcription	Fetal Kidney	kidney
43	chr10:118661800-118673200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:118661800-118680200	Weak transcription	HMEC	breast
45	chr10:118662600-118670200	Weak transcription	Brain Anterior Caudate	brain
46	chr10:118662600-118678000	Weak transcription	K562	blood
47	chr10:118663200-118666800	Strong transcription	A549	lung
48	chr10:118663800-118670200	Weak transcription	Fetal Brain Male	brain
49	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr10:118664000-118684800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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