Variant report

Variant	rs1637572
Chromosome Location	chr10:118628385-118628386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118606549..118608975-chr10:118626771..118628550,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1023551	0.81[CHB][hapmap]
rs10510025	0.93[CHD][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap]
rs10886016	0.93[CHD][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap]
rs10886021	0.91[JPT][hapmap]
rs11197834	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs11197863	0.86[ASW][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap]
rs1122688	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs12769006	0.91[JPT][hapmap]
rs1419832	0.93[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.80[AMR][1000 genomes]
rs1637570	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1637571	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1681752	0.84[GIH][hapmap]
rs1905538	0.89[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap]
rs1905544	0.86[ASW][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap]
rs2101264	0.89[CHD][hapmap];0.91[JPT][hapmap]
rs2118207	0.86[ASW][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap]
rs2170862	1.00[CEU][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs2531685	0.91[JPT][hapmap]
rs2531686	0.91[JPT][hapmap];0.80[AMR][1000 genomes]
rs2531689	0.83[JPT][hapmap];0.81[AMR][1000 genomes]
rs2627194	0.91[JPT][hapmap];0.83[AMR][1000 genomes]
rs2627197	1.00[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3781566	0.81[JPT][hapmap]
rs4752015	0.96[EUR][1000 genomes]
rs7083543	0.92[EUR][1000 genomes]
rs7087685	0.90[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs740600	0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap]
rs7896612	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7903295	0.89[CHD][hapmap];0.91[JPT][hapmap]
rs879255	0.81[JPT][hapmap];0.81[MEX][hapmap]
rs9420215	1.00[CEU][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs9421248	0.92[EUR][1000 genomes]
rs9421249	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9421250	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv971856	chr10:118626730-118630578	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1637572	TIAL1	cis	parietal	SCAN
rs1637572	KIAA1598	cis	cerebellum	SCAN
rs1637572	KIAA1598	cis	Whole Blood	GTEx
rs1637572	PNLIPRP2	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118621800-118628800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:118623600-118628800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:118627800-118628800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:118628000-118629000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:118628000-118630200	Weak transcription	Liver	Liver

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