Variant report

Variant	rs1681752
Chromosome Location	chr10:118611403-118611404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1023549	1.00[CEU][hapmap];0.91[TSI][hapmap]
rs1023550	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1023551	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1023552	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1637572	0.84[GIH][hapmap]
rs2170862	0.82[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2627197	0.82[GIH][hapmap]
rs4752015	0.85[ASN][1000 genomes]
rs7083543	0.86[ASN][1000 genomes]
rs7087685	0.82[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs7896612	0.80[ASN][1000 genomes]
rs9420215	0.82[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs9421246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9421248	0.86[ASN][1000 genomes]
rs9421249	0.83[ASN][1000 genomes]
rs9421250	0.82[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1681752	DKFZp781N1041	cis	multi-tissue	Pritchard
rs1681752	KIAA1598	cis	multi-tissue	Pritchard
rs1681752	KIAA1598	cis	cerebellum	SCAN
rs1681752	KIAA1598	cis	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118609800-118612000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:118610000-118611600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:118610200-118611600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:118610200-118612000	Weak transcription	NHEK	skin
5	chr10:118611200-118611600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:118611400-118612200	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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