Variant report

Variant	rs7087685
Chromosome Location	chr10:118616537-118616538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118608906..118610673-chr10:118614661..118617727,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225302	Chromatin interaction
ENSG00000188316	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10218905	0.84[GIH][hapmap]
rs1023552	0.86[ASN][1000 genomes]
rs10510025	0.87[GIH][hapmap];0.80[MEX][hapmap]
rs10886016	0.87[GIH][hapmap];0.80[MEX][hapmap]
rs11197834	0.81[EUR][1000 genomes]
rs1122688	0.82[GIH][hapmap]
rs1419832	0.95[MEX][hapmap]
rs1637570	0.83[CEU][hapmap];0.95[EUR][1000 genomes]
rs1637571	0.81[EUR][1000 genomes]
rs1637572	0.90[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs1681752	0.82[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs1905538	0.86[MEX][hapmap]
rs1905544	0.90[MEX][hapmap]
rs2101264	0.82[GIH][hapmap]
rs2118207	0.86[MEX][hapmap]
rs2170862	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2257791	0.83[YRI][hapmap]
rs2627197	0.95[CEU][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4752015	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7083543	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740600	0.95[MEX][hapmap]
rs7896612	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7903295	0.82[GIH][hapmap]
rs879255	0.80[MEX][hapmap]
rs9420215	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9421246	0.82[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs9421248	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9421249	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9421250	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs7087685	PNLIPRP2	cis	cerebellum	SCAN
rs7087685	TIAL1	cis	parietal	SCAN
rs7087685	KIAA1598	cis	lymphoblastoid	seeQTL
rs7087685	KIAA1598	cis	cerebellum	SCAN
rs7087685	KIAA1598	cis	multi-tissue	Pritchard
rs7087685	DKFZp781N1041	cis	multi-tissue	Pritchard
rs7087685	KIAA1598	cis	Whole Blood	GTEx

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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