Variant report

Variant	rs2627197
Chromosome Location	chr10:118622128-118622129
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118610746..118612605-chr10:118620170..118622659,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1023549	0.82[CHB][hapmap]
rs1023551	0.86[CHB][hapmap]
rs10510025	0.93[CHD][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap]
rs10886016	0.93[CHD][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap]
rs10886021	0.91[JPT][hapmap]
rs11197834	0.81[EUR][1000 genomes]
rs11197863	0.86[ASW][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs1122688	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs12769006	0.91[JPT][hapmap]
rs1419832	0.93[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap]
rs1637570	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1637571	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1637572	1.00[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1681752	0.82[GIH][hapmap]
rs1905538	0.88[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap]
rs1905544	0.86[ASW][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap]
rs2101264	0.88[CHD][hapmap];0.91[JPT][hapmap]
rs2118207	0.86[ASW][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap]
rs2170862	0.83[CEU][hapmap];0.85[GIH][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs2531685	0.91[JPT][hapmap]
rs2531686	0.91[JPT][hapmap]
rs2531689	0.83[JPT][hapmap]
rs2627194	0.91[JPT][hapmap]
rs3781566	0.82[JPT][hapmap]
rs4752015	0.94[EUR][1000 genomes]
rs7083543	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7087685	0.95[CEU][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs740600	0.93[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap]
rs7896612	0.94[EUR][1000 genomes]
rs7903295	0.88[CHD][hapmap];0.91[JPT][hapmap]
rs879255	0.82[JPT][hapmap];0.81[MEX][hapmap]
rs9420215	0.84[CEU][hapmap];0.85[GIH][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs9421248	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9421249	0.97[EUR][1000 genomes]
rs9421250	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2627197	KIAA1598	cis	multi-tissue	Pritchard
rs2627197	TIAL1	cis	parietal	SCAN
rs2627197	DKFZp781N1041	cis	multi-tissue	Pritchard
rs2627197	KIAA1598	cis	Whole Blood	GTEx
rs2627197	PNLIPRP2	cis	cerebellum	SCAN
rs2627197	KIAA1598	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118617800-118626800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:118621800-118628800	Weak transcription	Brain Cingulate Gyrus	brain

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