Variant report

Variant	rs10787735
Chromosome Location	chr10:118750248-118750249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118749831..118751722-chr10:118756839..118758419,2	K562	blood:
2	chr10:118749248..118750819-chr10:118752042..118753828,2	K562	blood:
3	chr10:118737800..118740271-chr10:118750000..118751537,2	MCF-7	breast:
4	chr10:118747095..118751622-chr10:118752184..118758339,7	K562	blood:
5	chr10:118731343..118732949-chr10:118747985..118750753,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10218905	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10510025	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs10886016	0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs10886017	0.84[EUR][1000 genomes]
rs10886021	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11197863	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1122688	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11593277	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11598817	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12769006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1419832	0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1637570	0.95[JPT][hapmap]
rs1637572	0.89[CHD][hapmap];0.91[JPT][hapmap]
rs1905538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1905539	0.81[EUR][1000 genomes]
rs1905542	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1905544	0.86[ASW][hapmap];0.89[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2101264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2118207	0.86[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2257791	0.84[TSI][hapmap]
rs2531685	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2531686	0.80[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2531689	0.85[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs2627194	0.80[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs2627197	0.88[CHD][hapmap];0.91[JPT][hapmap]
rs3781566	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs4092881	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4638225	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6585422	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7074047	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7077565	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7079724	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7083142	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7089699	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs719012	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs740600	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs7901788	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7903295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs879255	0.83[CEU][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755506	chr10:118748764-118800107	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10787735	KIAA1598	cis	Whole Blood	GTEx
rs10787735	PNLIPRP2	cis	cerebellum	SCAN

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118703600-118752200	Weak transcription	Gastric	stomach
2	chr10:118721600-118764000	Weak transcription	Ovary	ovary
3	chr10:118725200-118763000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:118735000-118752000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:118735000-118762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:118736200-118751400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:118736400-118753000	Weak transcription	Liver	Liver
8	chr10:118737200-118762800	Weak transcription	NHEK	skin
9	chr10:118737400-118760200	Weak transcription	Pancreas	Pancrea
10	chr10:118738800-118762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:118739400-118750800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:118741000-118756400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:118745000-118760400	Weak transcription	K562	blood
14	chr10:118745600-118751800	Weak transcription	Hela-S3	cervix
15	chr10:118747400-118763000	Weak transcription	HUVEC	blood vessel
16	chr10:118747600-118753000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:118748200-118750800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:118748200-118750800	Enhancers	Brain Hippocampus Middle	brain
19	chr10:118748200-118752600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr10:118748200-118753600	Enhancers	Brain Substantia Nigra	brain
21	chr10:118748400-118750400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:118748400-118752400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr10:118748600-118752600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr10:118748800-118750400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:118748800-118751200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:118748800-118751800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:118749000-118750400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:118749200-118751200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr10:118749400-118750800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr10:118749400-118750800	Weak transcription	Fetal Intestine Small	intestine
31	chr10:118749600-118751600	Weak transcription	Brain Angular Gyrus	brain
32	chr10:118749600-118754000	Weak transcription	Fetal Intestine Large	intestine
33	chr10:118749800-118759600	Weak transcription	Brain Germinal Matrix	brain
34	chr10:118750000-118750400	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr10:118750000-118751200	Strong transcription	A549	lung
36	chr10:118750000-118751800	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr10:118750000-118755200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:118750000-118756000	Weak transcription	HepG2	liver
39	chr10:118750200-118750400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
40	chr10:118750200-118750600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:118750200-118751000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr10:118750200-118751800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:118750200-118752400	Enhancers	Brain Anterior Caudate	brain
44	chr10:118750200-118764000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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