Variant report

Variant	rs10237943
Chromosome Location	chr7:136413791-136413792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10254377	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10257944	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10258085	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10266414	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10279562	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364489	0.90[ASN][1000 genomes]
rs2350451	0.90[ASN][1000 genomes]
rs28736424	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62485204	0.90[ASN][1000 genomes]
rs6467684	0.90[ASN][1000 genomes]
rs6943727	0.90[ASN][1000 genomes]
rs6950239	0.90[ASN][1000 genomes]
rs6970010	0.90[ASN][1000 genomes]
rs6974097	0.90[ASN][1000 genomes]
rs73727424	1.00[ASN][1000 genomes]
rs7790740	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7809833	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7810141	0.90[ASN][1000 genomes]
rs9642057	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3374876	chr7:136413245-136480051	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136413600-136414000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:136413600-136414000	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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