Variant report

Variant	rs10279562
Chromosome Location	chr7:136369412-136369413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10237943	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254377	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10257944	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10258085	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10266414	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1364489	0.90[ASN][1000 genomes]
rs2350451	0.90[ASN][1000 genomes]
rs28736424	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62485204	0.90[ASN][1000 genomes]
rs6467684	0.90[ASN][1000 genomes]
rs6943727	0.90[ASN][1000 genomes]
rs6950239	0.90[ASN][1000 genomes]
rs6970010	0.90[ASN][1000 genomes]
rs6974097	0.90[ASN][1000 genomes]
rs73727424	1.00[ASN][1000 genomes]
rs7790740	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7809833	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7810141	0.90[ASN][1000 genomes]
rs9642057	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508484	chr7:136333249-136384790	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3339283	chr7:136367812-136369960	Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3437766	chr7:136368362-136369460	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136367400-136370200	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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